Cpeb4 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000020300 T39252_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		1.000
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.949
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000020543 RRM 474 539
ENSMUSP00000020543 RRM 582 651
ENSMUSP00000090908 RRM 449 514
ENSMUSP00000090908 RRM 557 626
ENSMUSP00000105039 RRM 457 522
ENSMUSP00000105039 RRM 565 634
ENSMUSP00000105040 RRM 466 531
ENSMUSP00000105040 RRM 574 643
ENSMUSP00000116753 RRM 137 202
ENSMUSP00000116753 RRM 245 314

Links

Other RRM family RBPs
Other Mus musculus RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.904
AAEL012065 Aedes aegypti AAEL012065 I 0.705
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.934
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 1.000
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.949
CPEB4 Anolis carolinensis ENSACAG00000015039 I 1.000
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.927
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.949
AGAP002296 Anopheles gambiae AGAP002296 I 0.797
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.876
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.891
CPEB2 Bos taurus ENSBTAG00000019847 I 0.934
CPEB3 Bos taurus ENSBTAG00000015450 I 0.949
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 1.000
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.927
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.934
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 1.000
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.949
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.934
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.993
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.934
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.949
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.868
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.934
CPEB4 Cavia porcellus ENSCPOG00000015530 I 1.000
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.942
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.934
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.823
cpeb3 Danio rerio ENSDARG00000060103 I 0.935
CPEB2 Danio rerio ENSDARG00000052604 I 0.818
CPEB4 Danio rerio ENSDARG00000060495 I 0.985
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.801
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.934
GF10140 Drosophila ananassae FBgn0087181 I 0.897
GG15051 Drosophila erecta FBgn0107305 I 0.890
GH16131 Drosophila grimshawi FBgn0123602 I 0.890
orb2 Drosophila melanogaster FBgn0262573 D 0.890
GI12400 Drosophila mojavensis FBgn0135157 I 0.890
GL20808 Drosophila persimilis FBgn0158403 I 0.890
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.890
GJ12289 Drosophila virilis FBgn0199538 I 0.890
GK17460 Drosophila willistoni FBgn0219459 I 0.890
GE21274 Drosophila yakuba FBgn0238542 I 0.890
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.942
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.891
CPEB3 Equus caballus ENSECAG00000000077 I 0.942
LOC100058918 Equus caballus ENSECAG00000016921 I 1.000
CPEB2 Equus caballus ENSECAG00000008722 I 0.934
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 1.000
CPEB4 Gallus gallus ENSGALG00000014074 I 0.986
CPEB3 Gallus gallus ENSGALG00000006912 I 0.949
CPEB2 Gallus gallus ENSGALG00000014516 I 0.934
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.920
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.905
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.978
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.985
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 1.000
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.949
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.934
111676 Helobdella robusta 111676 I 0.790
69117 Helobdella robusta 69117 N 0.703
CPEB2 Homo sapiens ENSG00000137449 D 0.934
CPEB4 Homo sapiens ENSG00000113742 D 1.000
CPEB3 Homo sapiens ENSG00000107864 I 0.949
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.862
ISCW010113 Ixodes scapularis ISCW010113 I 0.891
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.860
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.949
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.934
CPEB4 Loxodonta africana ENSLAFG00000016030 I 1.000
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.934
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.949
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.993
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.942
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.934
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.949
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.934
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.986
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.949
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.949
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.934
CPEB4 Monodelphis domestica ENSMODG00000006036 I 1.000
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.934
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.949
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.757
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 1.000
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.912
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.853
CPEB4 Ochotona princeps ENSOPRG00000002868 I 1.000
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.768
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.986
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.927
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.942
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.949
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 1.000
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.934
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.985
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.898
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.978
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.934
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.934
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 1.000
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.735
CPEB4 Pan troglodytes ENSPTRG00000017545 I 1.000
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.934
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.949
PHUM335520 Pediculus humanus PHUM335520 I 0.897
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.934
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 1.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.949
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.854
CPEB4 Procavia capensis ENSPCAG00000007021 I 1.000
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 1.000
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.904
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.883
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.902
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.949
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 1.000
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.703
CPEB3 Sorex araneus ENSSARG00000001994 I 0.942
CPEB2 Sorex araneus ENSSARG00000010559 I 0.839
CPEB4 Sorex araneus ENSSARG00000013389 I 0.985
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.985
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.899
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.899
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.934
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.949
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.799
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.949
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 1.000
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.934
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.978
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.985
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.891
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 1.000
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.721
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.920
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.985
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.898
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.757
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.797
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 1.000
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.949
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.801
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.934
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.898
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.757
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.839
ADH10187 Xenopus laevis ADH10187 I 1.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.949
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.775
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.883