srsf5 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000002211 T42825_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.721
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.721
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000004701 RRM 6 68
ENSXETP00000004701 RRM 112 177
ENSXETP00000057107 RRM 6 68
ENSXETP00000057107 RRM 112 177

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100070669 Equus caballus ENSECAG00000023932 N 0.000
SRSF6 Loxodonta africana ENSLAFG00000006682 N 0.000
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Meleagris gallopavo ENSMGAG00000000888 N 0.000
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
SRSF6 Myotis lucifugus ENSMLUG00000016618 N 0.000
SRSF6 Ochotona princeps ENSOPRG00000002017 N 0.000
SRSF6 Ornithorhynchus anatinus ENSOANG00000008955 N 0.000
XR_023431.1 Pan troglodytes ENSPTRG00000013506 N 0.000
SRSF4 Sorex araneus ENSSARG00000001277 N 0.000
SRSF6 Spermophilus tridecemlineatus ENSSTOG00000010866 N 0.000
SRSF6 Tursiops truncatus ENSTTRG00000015410 N 0.000