BRADI3G55540 (Brachypodium distachyon)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BRADI3G55540 T24062_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G55540.1 PUF 674 708
BRADI3G55540.1 PUF 710 744
BRADI3G55540.1 PUF 746 780
BRADI3G55540.1 PUF 782 816
BRADI3G55540.1 PUF 818 851
BRADI3G55540.1 PUF 855 889
BRADI3G55540.1 PUF 891 925
BRADI3G55540.1 PUF 938 967
BRADI3G55540.2 PUF 674 708
BRADI3G55540.2 PUF 710 744
BRADI3G55540.2 PUF 746 780
BRADI3G55540.2 PUF 782 816
BRADI3G55540.2 PUF 818 851
BRADI3G55540.2 PUF 855 874

Links

Other PUF family RBPs
Other Brachypodium distachyon RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.796
30143.m001162 Ricinus communis 30143.m001162 N 0.726
30143.m001164 Ricinus communis 30143.m001164 N 0.755
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.729
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.718
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.729
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.764
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.743
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.761
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.760
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.760
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.764
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.736
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.726
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.735
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.720
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.720
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.804
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.725
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.744
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.822
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.742
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.732
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.705
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.711
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.745
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.722
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.726
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.796
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.718
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.718
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.711
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.726
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.718
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.724
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.782
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.742
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.756
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.927
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.786
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.773
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.740
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.742
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.739
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.743
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.920
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.761
MDP0000119814 Malus x domestica MDP0000119814 N 0.767
MDP0000176743 Malus x domestica MDP0000176743 N 0.775
MDP0000191652 Malus x domestica MDP0000191652 N 0.000
MDP0000314338 Malus x domestica MDP0000314338 N 0.746
MDP0000319167 Malus x domestica MDP0000319167 N 0.731
MDP0000776183 Malus x domestica MDP0000776183 N 0.736
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.797
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.724
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.728
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.000
mgf011401m Mimulus guttatus mgf011401m N 0.764
mgf015234m Mimulus guttatus mgf015234m N 0.743
mgf015734m Mimulus guttatus mgf015734m N 0.735
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.747
PK01617.1 Cannabis sativa PK01617.1 N 0.808
PK21390.1 Cannabis sativa PK21390.1 N 0.728
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.721
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.782
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.736
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.731
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.754
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.764
ppa000626m Prunus persica ppa000626m N 0.744
ppa000627m Prunus persica ppa000627m N 0.720
ppa000731m Prunus persica ppa000731m N 0.807
SB03G039600 Sorghum bicolor Sb03g039600 N 0.750
SB04G037410 Sorghum bicolor Sb04g037410 N 0.923
SB09G001090 Sorghum bicolor Sb09g001090 N 0.746
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.756
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.722