CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os01g74030
(
Oryza sativa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
LOC_Os01g74030
T24382_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g74030.1
PUF
559
593
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
LOC_Os01g74030.1
PUF
595
629
EIMPQALTLMTDVFGNYVVQKFFEHGSSAQIKELA
LOC_Os01g74030.1
PUF
631
665
QLIGRVLALSLQMYGCRVIQKAIEVVDLDQQTKMV
LOC_Os01g74030.1
PUF
668
701
LDGQVMRCVRDQNGNHVIQKCIECIPQHAIQFIV
LOC_Os01g74030.1
PUF
703
737
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIM
LOC_Os01g74030.1
PUF
740
774
EILQSVCLLATDQYGNYVVQHVLEHGKPHERSAII
LOC_Os01g74030.1
PUF
776
809
KLIGQIVQMSQQKFASNVIEKCLAFGNPVERQVL
LOC_Os01g74030.1
PUF
819
852
ESEHLEVMMKDQFANYVVQKVLETCDDQQREMIL
Links
Other
PUF
family RBPs
Other
Oryza sativa
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10428_g
Serpula lacrymans
Genemark.10428_g
N
0.000
Genemark.12170_g
Serpula lacrymans
Genemark.12170_g
N
0.000
Genemark.1672_g
Serpula lacrymans
Genemark.1672_g
N
0.000
Genemark.1932_g
Serpula lacrymans
Genemark.1932_g
N
0.000
Genemark.2815_g
Serpula lacrymans
Genemark.2815_g
N
0.000
Genemark.4852_g
Serpula lacrymans
Genemark.4852_g
N
0.000
Genemark.8764_g
Serpula lacrymans
Genemark.8764_g
N
0.000