LOC_Os02g57390 (Oryza sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 LOC_Os02g57390 T24383_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g57390.1 PUF 667 701
LOC_Os02g57390.1 PUF 703 737
LOC_Os02g57390.1 PUF 739 773
LOC_Os02g57390.1 PUF 775 809
LOC_Os02g57390.1 PUF 811 845
LOC_Os02g57390.1 PUF 848 882
LOC_Os02g57390.1 PUF 884 918
LOC_Os02g57390.1 PUF 931 960

Links

Other PUF family RBPs
Other Oryza sativa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.796
30143.m001162 Ricinus communis 30143.m001162 N 0.726
30143.m001164 Ricinus communis 30143.m001164 N 0.755
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.740
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.733
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.740
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.764
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.757
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.771
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.767
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.767
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.920
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.764
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.768
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.733
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.743
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.728
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.728
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.807
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.739
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.758
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.818
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.736
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.733
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.714
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.716
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.750
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.733
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.736
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.790
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.729
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.726
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.722
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.733
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.726
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.736
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.779
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.753
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.767
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.913
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.779
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.783
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.751
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.750
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.746
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.757
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.771
MDP0000119814 Malus x domestica MDP0000119814 N 0.767
MDP0000176743 Malus x domestica MDP0000176743 N 0.771
MDP0000314338 Malus x domestica MDP0000314338 N 0.750
MDP0000319167 Malus x domestica MDP0000319167 N 0.750
MDP0000776183 Malus x domestica MDP0000776183 N 0.740
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.797
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.728
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.732
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.710
mgf011401m Mimulus guttatus mgf011401m N 0.756
mgf015234m Mimulus guttatus mgf015234m N 0.754
mgf015734m Mimulus guttatus mgf015734m N 0.732
PK00601.1 Cannabis sativa PK00601.1 N 0.744
PK01617.1 Cannabis sativa PK01617.1 N 0.808
PK21390.1 Cannabis sativa PK21390.1 N 0.743
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.729
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.778
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.754
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.725
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.764
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.772
ppa000626m Prunus persica ppa000626m N 0.758
ppa000627m Prunus persica ppa000627m N 0.739
ppa000731m Prunus persica ppa000731m N 0.811
SB03G039600 Sorghum bicolor Sb03g039600 N 0.750
SB04G037410 Sorghum bicolor Sb04g037410 N 0.920
SB09G001090 Sorghum bicolor Sb09g001090 N 0.756
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.756
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.733