CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9GJ97_POPTR
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0001s25020
T24414_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s25020.1
PUF
730
760
EIVGHVVEFSADQYGSRFIQQKLETATMDEK
POPTR_0001s25020.1
PUF
766
800
EIMPQALPLMTDVFGNYVIQKFFEHGLPSQRRELA
POPTR_0001s25020.1
PUF
803
836
LFGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMV
POPTR_0001s25020.1
PUF
838
872
ELDGHVMRCVRDQNGNHVIQKCIECIPEDNIQFIV
POPTR_0001s25020.1
PUF
874
906
TFFDQVVNLSTHPYGCRVIQRILEHCKDAKTES
POPTR_0001s25020.1
PUF
911
945
EILGAVSMLAQDQYGNYVVQHVLEHGKSHERSAII
POPTR_0001s25020.1
PUF
947
981
ELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILV
POPTR_0001s25020.1
PUF
994
1023
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29595.m000292
Ricinus communis
29595.m000292
N
0.747
30143.m001162
Ricinus communis
30143.m001162
N
0.804
30143.m001164
Ricinus communis
30143.m001164
N
0.844
APUM3
Arabidopsis thaliana
AT2G29140-TAIR-G
N
0.826
APUM2
Arabidopsis thaliana
AT2G29190-TAIR-G
N
0.830
APUM1
Arabidopsis thaliana
AT2G29200-TAIR-G
N
0.844
APUM4
Arabidopsis thaliana
AT3G10360-TAIR-G
N
0.715
BGIOSIBCE005171
Oryza indica
BGIOSIBCE005171
N
0.782
BGIOSIBCE017275
Oryza indica
BGIOSIBCE017275
N
0.796
BRADI2G39240
Brachypodium distachyon
BRADI2G39240
N
0.785
BRADI2G39410
Brachypodium distachyon
BRADI2G39410
N
0.785
BRADI3G55540
Brachypodium distachyon
BRADI3G55540
N
0.721
cassava10774.m1
Manihot esculenta
cassava10774.m1
N
0.736
cassava13144.valid.m1
Manihot esculenta
cassava13144.valid.m1
N
0.841
cassava19436.valid.m1
Manihot esculenta
cassava19436.valid.m1
N
0.913
cassava19437.valid.m1
Manihot esculenta
cassava19437.valid.m1
N
0.912
cassava30948.valid.m1
Manihot esculenta
cassava30948.valid.m1
N
0.923
cassava30949.valid.m1
Manihot esculenta
cassava30949.valid.m1
N
0.923
cassava33553.m1
Manihot esculenta
cassava33553.m1
N
0.762
Cucsa.138830
Cucumis sativus
Cucsa.138830
N
0.884
Cucsa.165170
Cucumis sativus
Cucsa.165170
N
0.808
Cucsa.308530
Cucumis sativus
Cucsa.308530
N
0.736
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.752
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.773
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.751
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.732
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.760
XM_002879157.1
Arabidopsis lyrata
fgenesh2_kg.4__893__AT2G29140.1
N
0.830
XM_002880988.1
Arabidopsis lyrata
fgenesh2_kg.4__898__AT2G29200.1
N
0.833
Glyma10g35290.1
Glycine max
Glyma10g35290.1
N
0.743
Glyma11g14500.1
Glycine max
Glyma11g14500.1
N
0.884
Glyma11g14530.1
Glycine max
Glyma11g14530.1
N
0.877
Glyma11g14550.1
Glycine max
Glyma11g14550.1
N
0.873
Glyma12g06430.1
Glycine max
Glyma12g06430.1
N
0.873
Glyma12g06450.1
Glycine max
Glyma12g06450.1
N
0.877
Glyma15g04060.1
Glycine max
Glyma15g04060.1
N
0.891
Glyma20g32230.1
Glycine max
Glyma20g32230.1
N
0.738
GRMZM2G012964
Zea mays
GRMZM2G012964
N
0.781
GRMZM2G042623
Zea mays
GRMZM2G042623
N
0.778
GRMZM2G123537
Zea mays
GRMZM2G123537
N
0.728
GSVIVG00016236001
Vitis vinifera
GSVIVG00016236001
N
0.736
GSVIVG00016507001
Vitis vinifera
GSVIVG00016507001
N
0.856
GSVIVG00024918001
Vitis vinifera
GSVIVG00024918001
N
0.888
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.788
LOC_Os01g62650
Oryza sativa
LOC_Os01g62650
N
0.833
LOC_Os01g74030
Oryza sativa
LOC_Os01g74030
N
0.782
LOC_Os02g57390
Oryza sativa
LOC_Os02g57390
N
0.729
LOC_Os05g01910
Oryza sativa
LOC_Os05g01910
N
0.796
MDP0000176743
Malus x domestica
MDP0000176743
N
0.722
MDP0000191652
Malus x domestica
MDP0000191652
N
0.839
MDP0000314338
Malus x domestica
MDP0000314338
N
0.830
MDP0000319167
Malus x domestica
MDP0000319167
N
0.898
MDP0000776183
Malus x domestica
MDP0000776183
N
0.830
Medtr1g120450
Medicago truncatula
Medtr1g120450
N
0.729
Medtr2g117180
Medicago truncatula
Medtr2g117180
N
0.865
Medtr4g084270
Medicago truncatula
Medtr4g084270
N
0.870
Medtr5g087730
Medicago truncatula
Medtr5g087730
N
0.764
mgf011401m
Mimulus guttatus
mgf011401m
N
0.721
mgf015234m
Mimulus guttatus
mgf015234m
N
0.797
mgf015734m
Mimulus guttatus
mgf015734m
N
0.865
PK00601.1
Cannabis sativa
PK00601.1
N
0.841
PK01617.1
Cannabis sativa
PK01617.1
N
0.744
PK21390.1
Cannabis sativa
PK21390.1
N
0.880
XM_002311043.1
Populus trichocarpa
POPTR_0008s03630
N
0.740
B9HMK2_POPTR
Populus trichocarpa
POPTR_0008s05850
N
0.837
B9HPE1_POPTR
Populus trichocarpa
POPTR_0009s03980
N
0.934
B9HTG3_POPTR
Populus trichocarpa
POPTR_0010s20870
N
0.848
B9HUI2_POPTR
Populus trichocarpa
POPTR_0010s23250
N
0.726
ppa000626m
Prunus persica
ppa000626m
N
0.837
ppa000627m
Prunus persica
ppa000627m
N
0.894
ppa000731m
Prunus persica
ppa000731m
N
0.758
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.819
SB04G037410
Sorghum bicolor
Sb04g037410
N
0.728
SB09G001090
Sorghum bicolor
Sb09g001090
N
0.785
XM_002884744.1
Arabidopsis lyrata
scaffold_301182.1
N
0.708
scaffold_4100004.1
Arabidopsis lyrata
scaffold_4100004.1
N
0.830