B9GJ97_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0001s25020 T24414_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s25020.1 PUF 730 760
POPTR_0001s25020.1 PUF 766 800
POPTR_0001s25020.1 PUF 803 836
POPTR_0001s25020.1 PUF 838 872
POPTR_0001s25020.1 PUF 874 906
POPTR_0001s25020.1 PUF 911 945
POPTR_0001s25020.1 PUF 947 981
POPTR_0001s25020.1 PUF 994 1023

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.747
30143.m001162 Ricinus communis 30143.m001162 N 0.804
30143.m001164 Ricinus communis 30143.m001164 N 0.844
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.826
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.830
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.844
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.715
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.782
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.796
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.785
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.785
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.721
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.736
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.841
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.913
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.912
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.923
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.923
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.762
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.884
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.808
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.736
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.752
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.773
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.751
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.732
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.760
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.830
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.833
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.743
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.884
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.877
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.873
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.873
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.877
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.891
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.738
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.781
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.778
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.728
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.736
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.856
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.888
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.788
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.833
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.782
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.729
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.796
MDP0000176743 Malus x domestica MDP0000176743 N 0.722
MDP0000191652 Malus x domestica MDP0000191652 N 0.839
MDP0000314338 Malus x domestica MDP0000314338 N 0.830
MDP0000319167 Malus x domestica MDP0000319167 N 0.898
MDP0000776183 Malus x domestica MDP0000776183 N 0.830
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.729
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.865
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.870
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.764
mgf011401m Mimulus guttatus mgf011401m N 0.721
mgf015234m Mimulus guttatus mgf015234m N 0.797
mgf015734m Mimulus guttatus mgf015734m N 0.865
PK00601.1 Cannabis sativa PK00601.1 N 0.841
PK01617.1 Cannabis sativa PK01617.1 N 0.744
PK21390.1 Cannabis sativa PK21390.1 N 0.880
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.740
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.837
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.934
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.848
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.726
ppa000626m Prunus persica ppa000626m N 0.837
ppa000627m Prunus persica ppa000627m N 0.894
ppa000731m Prunus persica ppa000731m N 0.758
SB03G039600 Sorghum bicolor Sb03g039600 N 0.819
SB04G037410 Sorghum bicolor Sb04g037410 N 0.728
SB09G001090 Sorghum bicolor Sb09g001090 N 0.785
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.708
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.830