XM_002311043.1 (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0008s03630 T24425_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s03630.1 PUF 696 730
POPTR_0008s03630.1 PUF 732 765
POPTR_0008s03630.1 PUF 768 802
POPTR_0008s03630.1 PUF 804 838
POPTR_0008s03630.1 PUF 840 874
POPTR_0008s03630.1 PUF 877 911
POPTR_0008s03630.1 PUF 913 947
POPTR_0008s03630.1 PUF 960 989
POPTR_0008s03630.2 PUF 696 730
POPTR_0008s03630.2 PUF 732 765
POPTR_0008s03630.2 PUF 768 802
POPTR_0008s03630.2 PUF 804 838
POPTR_0008s03630.2 PUF 840 874
POPTR_0008s03630.2 PUF 877 911
POPTR_0008s03630.2 PUF 913 947
POPTR_0008s03630.2 PUF 960 989
POPTR_0008s03630.3 PUF 696 730
POPTR_0008s03630.3 PUF 732 765
POPTR_0008s03630.3 PUF 768 802
POPTR_0008s03630.3 PUF 804 838
POPTR_0008s03630.3 PUF 840 874
POPTR_0008s03630.3 PUF 877 911
POPTR_0008s03630.3 PUF 913 947
POPTR_0008s03630.3 PUF 960 989

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.872
30143.m001162 Ricinus communis 30143.m001162 N 0.744
30143.m001164 Ricinus communis 30143.m001164 N 0.769
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.725
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.722
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.726
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.782
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.736
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.743
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.738
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.738
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.782
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.870
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.772
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.747
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.768
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.754
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.754
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.883
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.753
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.758
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.858
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.743
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.747
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.725
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.719
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.746
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.721
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.722
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.851
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.761
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.764
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.761
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.764
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.764
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.760
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.830
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.735
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.742
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.767
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.840
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.783
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.761
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.761
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.772
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.736
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.778
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.743
MDP0000176743 Malus x domestica MDP0000176743 N 0.833
MDP0000191652 Malus x domestica MDP0000191652 N 0.709
MDP0000314338 Malus x domestica MDP0000314338 N 0.764
MDP0000319167 Malus x domestica MDP0000319167 N 0.750
MDP0000776183 Malus x domestica MDP0000776183 N 0.758
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.830
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.756
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.745
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.710
mgf011401m Mimulus guttatus mgf011401m N 0.804
mgf015734m Mimulus guttatus mgf015734m N 0.760
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.769
PK01617.1 Cannabis sativa PK01617.1 N 0.844
PK21390.1 Cannabis sativa PK21390.1 N 0.756
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.740
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.772
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.743
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.783
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.909
ppa000626m Prunus persica ppa000626m N 0.773
ppa000627m Prunus persica ppa000627m N 0.760
ppa000731m Prunus persica ppa000731m N 0.884
SB03G039600 Sorghum bicolor Sb03g039600 N 0.779
SB04G037410 Sorghum bicolor Sb04g037410 N 0.775
SB09G001090 Sorghum bicolor Sb09g001090 N 0.738
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.775
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.721