B9HPE1_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0009s03980 T24428_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s03980.1 PUF 673 707
POPTR_0009s03980.1 PUF 710 743
POPTR_0009s03980.1 PUF 745 778
POPTR_0009s03980.1 PUF 781 815
POPTR_0009s03980.1 PUF 817 849
POPTR_0009s03980.1 PUF 854 888
POPTR_0009s03980.1 PUF 890 924
POPTR_0009s03980.1 PUF 937 966

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.739
30143.m001162 Ricinus communis 30143.m001162 N 0.808
30143.m001164 Ricinus communis 30143.m001164 N 0.848
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.844
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.837
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.855
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.717
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.786
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.796
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.789
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.789
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.731
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.727
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.841
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.931
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.931
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.923
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.923
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.754
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.905
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.804
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.739
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.745
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.757
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.737
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.722
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.764
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.855
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.848
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.738
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.899
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.895
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.899
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.899
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.902
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.912
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.734
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.789
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.792
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.735
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.735
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.856
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.891
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.770
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.826
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.786
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.725
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.796
MDP0000176743 Malus x domestica MDP0000176743 N 0.732
MDP0000191652 Malus x domestica MDP0000191652 N 0.857
MDP0000314338 Malus x domestica MDP0000314338 N 0.830
MDP0000319167 Malus x domestica MDP0000319167 N 0.901
MDP0000776183 Malus x domestica MDP0000776183 N 0.830
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.725
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.887
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.877
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.775
mgf011401m Mimulus guttatus mgf011401m N 0.728
mgf015234m Mimulus guttatus mgf015234m N 0.801
mgf015734m Mimulus guttatus mgf015734m N 0.880
PK00601.1 Cannabis sativa PK00601.1 N 0.848
PK01617.1 Cannabis sativa PK01617.1 N 0.746
PK21390.1 Cannabis sativa PK21390.1 N 0.891
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.934
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.743
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.837
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.851
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.729
ppa000626m Prunus persica ppa000626m N 0.837
ppa000627m Prunus persica ppa000627m N 0.908
ppa000731m Prunus persica ppa000731m N 0.750
SB03G039600 Sorghum bicolor Sb03g039600 N 0.830
SB04G037410 Sorghum bicolor Sb04g037410 N 0.731
SB09G001090 Sorghum bicolor Sb09g001090 N 0.792
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.710
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.855