cassava10774.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava10774.m1 T24691_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava10774.m1 PUF 449 483
cassava10774.m1 PUF 485 519
cassava10774.m1 PUF 521 555
cassava10774.m1 PUF 557 591
cassava10774.m1 PUF 593 627
cassava10774.m1 PUF 631 663
cassava10774.m1 PUF 666 700
cassava10774.m1 PUF 713 742

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.866
30143.m001162 Ricinus communis 30143.m001162 N 0.726
30143.m001164 Ricinus communis 30143.m001164 N 0.758
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.724
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.724
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.724
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.772
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.719
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.730
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.721
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.721
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.764
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.762
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.743
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.750
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.732
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.732
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.880
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.722
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.751
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.855
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.743
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.751
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.725
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.716
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.750
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.713
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.727
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.848
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.740
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.733
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.736
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.733
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.728
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.839
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.718
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.729
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.743
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.843
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.780
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.747
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.757
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.769
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.719
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.764
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.730
MDP0000119814 Malus x domestica MDP0000119814 N 0.804
MDP0000176743 Malus x domestica MDP0000176743 N 0.833
MDP0000191652 Malus x domestica MDP0000191652 N 0.000
MDP0000314338 Malus x domestica MDP0000314338 N 0.765
MDP0000319167 Malus x domestica MDP0000319167 N 0.743
MDP0000776183 Malus x domestica MDP0000776183 N 0.758
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.841
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.743
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.733
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.705
mgf011401m Mimulus guttatus mgf011401m N 0.785
mgf015234m Mimulus guttatus mgf015234m N 0.736
mgf015734m Mimulus guttatus mgf015734m N 0.732
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.755
PK01617.1 Cannabis sativa PK01617.1 N 0.844
PK21390.1 Cannabis sativa PK21390.1 N 0.733
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.736
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.870
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.758
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.727
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.769
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.841
ppa000626m Prunus persica ppa000626m N 0.765
ppa000627m Prunus persica ppa000627m N 0.732
ppa000731m Prunus persica ppa000731m N 0.891
SB03G039600 Sorghum bicolor Sb03g039600 N 0.765
SB04G037410 Sorghum bicolor Sb04g037410 N 0.750
SB09G001090 Sorghum bicolor Sb09g001090 N 0.721
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.764
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.713