cassava19436.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava19436.valid.m1 T24695_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19436.valid.m1 PUF 722 756
cassava19436.valid.m1 PUF 758 792
cassava19436.valid.m1 PUF 794 828
cassava19436.valid.m1 PUF 830 864
cassava19436.valid.m1 PUF 866 900
cassava19436.valid.m1 PUF 903 937
cassava19436.valid.m1 PUF 939 973
cassava19436.valid.m1 PUF 986 1015

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.758
30143.m001162 Ricinus communis 30143.m001162 N 0.819
30143.m001164 Ricinus communis 30143.m001164 N 0.859
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.895
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.895
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.906
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.715
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.800
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.811
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.796
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.796
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.726
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.743
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.855
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.967
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.967
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.967
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.769
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.909
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.822
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.744
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.764
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.776
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.749
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.730
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.783
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.895
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.906
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.751
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.928
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.928
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.928
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.928
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.931
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.924
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.746
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.799
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.796
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.729
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.743
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.866
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.924
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.782
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.851
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.800
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.733
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.811
MDP0000119814 Malus x domestica MDP0000119814 N 0.000
MDP0000176743 Malus x domestica MDP0000176743 N 0.729
MDP0000191652 Malus x domestica MDP0000191652 N 0.880
MDP0000314338 Malus x domestica MDP0000314338 N 0.855
MDP0000319167 Malus x domestica MDP0000319167 N 0.935
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.744
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.916
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.913
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.790
mgf011401m Mimulus guttatus mgf011401m N 0.744
mgf015234m Mimulus guttatus mgf015234m N 0.837
mgf015734m Mimulus guttatus mgf015734m N 0.895
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.716
PK00601.1 Cannabis sativa PK00601.1 N 0.859
PK01617.1 Cannabis sativa PK01617.1 N 0.769
PK21390.1 Cannabis sativa PK21390.1 N 0.928
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.913
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.747
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.851
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.931
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.866
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.740
ppa000626m Prunus persica ppa000626m N 0.862
ppa000627m Prunus persica ppa000627m N 0.931
ppa000731m Prunus persica ppa000731m N 0.765
SB03G039600 Sorghum bicolor Sb03g039600 N 0.855
SB04G037410 Sorghum bicolor Sb04g037410 N 0.726
SB09G001090 Sorghum bicolor Sb09g001090 N 0.803
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.708
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.895