CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G042623
(
Zea mays
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
GRMZM2G042623
T24942_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G042623_P01
PUF
537
571
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
GRMZM2G042623_P01
PUF
573
607
EIMPQALTLMTDVFGNYVVQKFFEHGSTAQIKELA
GRMZM2G042623_P01
PUF
609
643
QLIGRVLALSLQMYGCRVIQKAIEVVDLELQTKMV
GRMZM2G042623_P01
PUF
645
679
ELEGHVMRCVRDQNGNHVIQKCIECIPQHAIEFII
GRMZM2G042623_P01
PUF
681
715
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIM
GRMZM2G042623_P01
PUF
718
752
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAII
GRMZM2G042623_P01
PUF
754
788
KLIGQIVQMSQQKFASNVIEKCLVFGNPVERQVLI
GRMZM2G042623_P01
PUF
798
830
SEPLEVMMKDQFGNYVVQKVLETCDDQQREMIL
GRMZM2G042623_P02
PUF
533
567
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
GRMZM2G042623_P02
PUF
569
603
EIMPQALTLMTDVFGNYVVQKFFEHGSTAQIKELA
GRMZM2G042623_P02
PUF
605
639
QLIGRVLALSLQMYGCRVIQKAIEVVDLELQTKMV
GRMZM2G042623_P02
PUF
641
675
ELEGHVMRCVRDQNGNHVIQKCIECIPQHAIEFII
GRMZM2G042623_P02
PUF
677
711
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIM
GRMZM2G042623_P02
PUF
714
748
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAII
GRMZM2G042623_P02
PUF
750
784
KLIGQIVQMSQQKFASNVIEKCLVFGNPVERQVLI
GRMZM2G042623_P02
PUF
794
826
SEPLEVMMKDQFGNYVVQKVLETCDDQQREMIL
Links
Other
PUF
family RBPs
Other
Zea mays
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
C_scaffold_35000023
Phytophthora ramorum
C_scaffold_35000023
N
0.000
PITG_11179
Phytophthora infestans
PITG_11179
N
0.000
s_469761
Phytophthora sojae
s_469761
N
0.000