GRMZM2G042623 (Zea mays)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GRMZM2G042623 T24942_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G042623_P01 PUF 537 571
GRMZM2G042623_P01 PUF 573 607
GRMZM2G042623_P01 PUF 609 643
GRMZM2G042623_P01 PUF 645 679
GRMZM2G042623_P01 PUF 681 715
GRMZM2G042623_P01 PUF 718 752
GRMZM2G042623_P01 PUF 754 788
GRMZM2G042623_P01 PUF 798 830
GRMZM2G042623_P02 PUF 533 567
GRMZM2G042623_P02 PUF 569 603
GRMZM2G042623_P02 PUF 605 639
GRMZM2G042623_P02 PUF 641 675
GRMZM2G042623_P02 PUF 677 711
GRMZM2G042623_P02 PUF 714 748
GRMZM2G042623_P02 PUF 750 784
GRMZM2G042623_P02 PUF 794 826

Links

Other PUF family RBPs
Other Zea mays RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.753
30143.m001162 Ricinus communis 30143.m001162 N 0.810
30143.m001164 Ricinus communis 30143.m001164 N 0.853
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.767
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.760
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.774
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.746
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.946
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.946
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.939
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.939
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.756
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.729
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.845
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.796
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.788
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.788
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.788
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.756
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.788
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.846
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.771
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.746
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.743
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.727
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.739
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.760
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.771
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.767
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.750
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.796
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.796
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.796
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.806
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.799
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.799
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.746
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.975
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.753
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.739
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.846
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.806
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.759
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.853
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.946
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.767
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.946
MDP0000119814 Malus x domestica MDP0000119814 N 0.713
MDP0000176743 Malus x domestica MDP0000176743 N 0.749
MDP0000191652 Malus x domestica MDP0000191652 N 0.741
MDP0000314338 Malus x domestica MDP0000314338 N 0.838
MDP0000319167 Malus x domestica MDP0000319167 N 0.795
MDP0000776183 Malus x domestica MDP0000776183 N 0.832
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.761
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.791
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.791
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.785
mgf011401m Mimulus guttatus mgf011401m N 0.731
mgf015234m Mimulus guttatus mgf015234m N 0.817
mgf015734m Mimulus guttatus mgf015734m N 0.773
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.711
PK00601.1 Cannabis sativa PK00601.1 N 0.835
PK01617.1 Cannabis sativa PK01617.1 N 0.761
PK21390.1 Cannabis sativa PK21390.1 N 0.788
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.778
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.742
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.842
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.792
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.856
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.731
ppa000626m Prunus persica ppa000626m N 0.839
ppa000627m Prunus persica ppa000627m N 0.788
ppa000731m Prunus persica ppa000731m N 0.774
SB03G039600 Sorghum bicolor Sb03g039600 N 0.838
SB04G037410 Sorghum bicolor Sb04g037410 N 0.760
SB09G001090 Sorghum bicolor Sb09g001090 N 0.978
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.735
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.771