ENSDORG00000011155 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000011155 T36504_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.787
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.787
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.787
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.773
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000010483 RRM 37 106
ENSDORP00000010483 RRM 128 188

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.759
AAA49742 Xenopus laevis AAA49742 I 0.759
AAA49949 Xenopus laevis AAA49949 I 0.844
AAA49950 Xenopus laevis AAA49950 I 0.839
AAH45260 Xenopus laevis AAH45260 I 0.759
AAH72090 Xenopus laevis AAH72090 I 0.759
AAI69881 Xenopus laevis AAI69881 I 0.839
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.787
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.801
CBF67555 Xenopus laevis CBF67555 I 0.759
CBF67578 Xenopus laevis CBF67578 I 0.839
CBF67672 Xenopus laevis CBF67672 I 0.759
CBU92428 Xenopus laevis CBU92428 I 0.759
CBU92451 Xenopus laevis CBU92451 I 0.839
CBU92546 Xenopus laevis CBU92546 I 0.759
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.794
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.887
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.787
LOC781499 Bos taurus ENSBTAG00000021580 I 0.894
LOC785445 Bos taurus ENSBTAG00000025621 I 0.746
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.766
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.704
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.745
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.787
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.725
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.752
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.773
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.725
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.894
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.727
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.704
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.708
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.706
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.759
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.725
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.713
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.704
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.766
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.780
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.732
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.704
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.871
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.766
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.750
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.725
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.718
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.711
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.787
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.787
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.894
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.766
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.759
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.730
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.787
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.730
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.894
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.894
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.766
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.709
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.771
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.787
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.894
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.864
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.787
LOC100066794 Equus caballus ENSECAG00000023237 I 0.887
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.752
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.701
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.773
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.718
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.787
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.887
HNRNPA1 Homo sapiens ENSG00000135486 D 0.787
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.773
HNRNPA3 Homo sapiens ENSG00000170144 I 0.894
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.787
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.727
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.759
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.879
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.787
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.894
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.801
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.773
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.787
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.773
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.962
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.794
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.773
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.894
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.782
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.879
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.797
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.787
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.706
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.773
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.894
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.894
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.732
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.787
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.766
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.787
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.787
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.766
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.718
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.894
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.701
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.773
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.787
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.894
Gm8991 Mus musculus ENSMUSG00000059179 I 0.879
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.894
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.718
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.780
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.787
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.773
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.773
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.780
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.739
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.759
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.773
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.780
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.787
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.773
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.766
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.780
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.752
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.741
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.852
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.728
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.962
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.773
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.787
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.894
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.787
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.787
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.787
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.787
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.787
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.894
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.894
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.839
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.745
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.719
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.711
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.845
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.759
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.701
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.741
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.711
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.894
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.926
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.752
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.705
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.711
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.794
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.918
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.734
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.714
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.787
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.872
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.752
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.713
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.770
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.703
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.823
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.864
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.787
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.894
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.920
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.787
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.711
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.739
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.879
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.738
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.745
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.741
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.787
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.894
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.765
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.851
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.766
P17130 Xenopus laevis P17130 I 0.759
P51968 Xenopus laevis P51968 I 0.844
P51992 Xenopus laevis P51992 I 0.839