ELAVL4 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000000523 T42191_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.986
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.986
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.986
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.948
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.948
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.948
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000001237 RRM 55 93
ENSTRUP00000001237 RRM 91 153
ENSTRUP00000001237 RRM 169 237
ENSTRUP00000001237 RRM 320 390
ENSTRUP00000001238 RRM 55 125
ENSTRUP00000001238 RRM 141 209
ENSTRUP00000001238 RRM 312 382
ENSTRUP00000001239 RRM 48 118
ENSTRUP00000001239 RRM 134 202
ENSTRUP00000001239 RRM 272 342
ENSTRUP00000001240 RRM 35 105
ENSTRUP00000001240 RRM 121 189
ENSTRUP00000001240 RRM 268 338
ENSTRUP00000001241 RRM 43 113
ENSTRUP00000001241 RRM 129 197
ENSTRUP00000001241 RRM 269 339
ENSTRUP00000001242 RRM 43 113
ENSTRUP00000001242 RRM 129 197
ENSTRUP00000001242 RRM 268 338
ENSTRUP00000001243 RRM 4 52
ENSTRUP00000001243 RRM 68 136
ENSTRUP00000001243 RRM 206 276

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

201 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.769
AAA96943 Xenopus laevis AAA96943 I 0.943
AAA96944 Xenopus laevis AAA96944 I 0.906
AAA96945 Xenopus laevis AAA96945 I 0.991
AAH43735 Xenopus laevis AAH43735 I 0.872
AAH56021 Xenopus laevis AAH56021 I 0.872
AAH86269 Xenopus laevis AAH86269 I 0.764
AAH94189 Xenopus laevis AAH94189 I 0.948
AAH99348 Xenopus laevis AAH99348 I 0.991
AAI16460 Xenopus laevis AAI16460 I 0.731
AAI69769 Xenopus laevis AAI69769 I 0.906
AAI70539 Xenopus laevis AAI70539 I 0.948
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.783
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.948
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.901
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.986
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.774
CAA59430 Xenopus laevis CAA59430 I 0.939
CBF67567 Xenopus laevis CBF67567 I 0.991
CBU92440 Xenopus laevis CBU92440 I 0.991
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.723
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.723
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.986
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.901
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.948
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.769
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.901
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.986
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.948
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.986
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.901
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.774
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.807
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.986
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.720
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.948
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.986
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.986
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.948
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.725
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.788
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.911
hug Danio rerio ENSDARG00000016405 I 0.793
elavl1 Danio rerio ENSDARG00000038695 I 0.775
elavl2 Danio rerio ENSDARG00000040732 I 0.929
elavl4 Danio rerio ENSDARG00000045639 I 0.981
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.986
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.773
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.769
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.887
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.774
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.948
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.986
LOC100060819 Equus caballus ENSECAG00000019459 I 0.769
ELAVL2 Equus caballus ENSECAG00000020142 I 0.948
LOC100056901 Equus caballus ENSECAG00000020594 I 0.822
LOC100051268 Equus caballus ENSECAG00000022284 I 0.986
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.769
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.986
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.948
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.720
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.840
ELAVL1 Felis catus ENSFCAG00000014947 I 0.774
ELAVL1 Homo sapiens ENSG00000066044 D 0.774
ELAVL2 Homo sapiens ENSG00000107105 D 0.948
ELAVL4 Homo sapiens ENSG00000162374 D 0.986
ELAVL3 Homo sapiens ENSG00000196361 I 0.901
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.772
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.991
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.728
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.911
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.934
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.769
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.986
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.934
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.986
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.948
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.774
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.901
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.986
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.774
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.901
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.948
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.761
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.986
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.906
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.769
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.981
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.847
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.986
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.774
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.986
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.778
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.943
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.774
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.948
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.986
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.986
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.752
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.948
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.774
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.869
Elavl3 Mus musculus ENSMUSG00000003410 I 0.892
Elavl2 Mus musculus ENSMUSG00000008489 I 0.948
Elavl4 Mus musculus ENSMUSG00000028546 I 0.986
Elavl1 Mus musculus ENSMUSG00000040028 I 0.774
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.822
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.948
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.783
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.986
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.901
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.774
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.802
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.986
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.783
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.948
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.986
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.723
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.934
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.902
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.783
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.995
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.986
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.864
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.720
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.986
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.774
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.757
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.948
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.986
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.774
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.883
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.948
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.948
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.883
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.901
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.774
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.948
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.892
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.986
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.948
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.751
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.986
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.948
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.778
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.901
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.803
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.825
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.759
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.765
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.840
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.718
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.769
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.915
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.986
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.934
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 1.000
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.902
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.756
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.751
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.728
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.920
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.911
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.986
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.774
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.901
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.901
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.943
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.948
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.986
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.991
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.769
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.868
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.898
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.728
Rbp9 Drosophila melanogaster FBgn0010263 D 0.745
GF14992 Drosophila ananassae FBgn0092017 I 0.727
GG24901 Drosophila erecta FBgn0117030 I 0.727
GH13638 Drosophila grimshawi FBgn0121114 I 0.736
GI11879 Drosophila mojavensis FBgn0134637 I 0.727
GL26299 Drosophila persimilis FBgn0163881 I 0.741
GM18380 Drosophila sechellia FBgn0173287 I 0.727
GJ13991 Drosophila virilis FBgn0201209 I 0.727
GK14865 Drosophila willistoni FBgn0216870 I 0.727
GE18193 Drosophila yakuba FBgn0235624 I 0.727
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.727
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.746
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.755
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.784
ISCW010302 Ixodes scapularis ISCW010302 N 0.709
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.783
Q1JQ73 Xenopus laevis Q1JQ73 I 0.731
Q5U259 Xenopus laevis Q5U259 I 0.764
Q7SZT7 Xenopus laevis Q7SZT7 I 0.872
Q91584 Xenopus laevis Q91584 I 0.906
Q91903 Xenopus laevis Q91903 I 0.943