MDP0000614064 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000614064 T57705_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000614064 RRM 70 140
MDP0000614064 RRM 163 234
MDP0000614064 RRM 272 336

Links

Other RRM family RBPs
Other Malus x domestica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.788
29842.m003612 Ricinus communis 29842.m003612 N 0.736
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.712
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.760
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.760
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.726
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.812
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.827
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.827
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.827
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.827
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.827
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.721
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.740
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.731
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.726
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.707
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.760
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.726
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.755
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.750
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.731
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.707
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.702
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.702
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.721
MDP0000223369 Malus x domestica MDP0000223369 N 0.986
MDP0000294628 Malus x domestica MDP0000294628 I 0.716
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.707
mgf010468m Mimulus guttatus mgf010468m I 0.793
mgf014417m Mimulus guttatus mgf014417m N 0.764
PK10695.1 Cannabis sativa PK10695.1 I 0.731
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.808
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.726
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.702
ppa006577m Prunus persica ppa006577m I 0.923
ppa006617m Prunus persica ppa006617m N 0.712
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.740