Cucsa.166080 (Cucumis sativus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Cucsa.166080 T00859_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.166080.1 CCCH ZF 241 262
Cucsa.166080.1 RRM 388 447
Cucsa.166080.2 CCCH ZF 241 262
Cucsa.166080.2 RRM 388 447
Cucsa.166080.3 CCCH ZF 241 262
Cucsa.166080.3 RRM 388 447
Cucsa.166080.4 CCCH ZF 241 262
Cucsa.166080.4 RRM 388 447

Links

Other CCCH ZF,RRM family RBPs
Other Cucumis sativus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.826
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.915
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.892
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.915
mgf014647m Mimulus guttatus mgf014647m N 0.880
mgf002273m Mimulus guttatus mgf002273m N 0.824
mgf000973m Mimulus guttatus mgf000973m N 0.833
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.951
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.951
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.816
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.951
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.951
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.816
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.723
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.735
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.774
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.795
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.890
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
ppa023263m Prunus persica ppa023263m N 0.963
ppa003564m Prunus persica ppa003564m N 0.718
ppa002413m Prunus persica ppa002413m N 0.880
ppa002383m Prunus persica ppa002383m N 0.812
MDP0000259773 Malus x domestica MDP0000259773 N 0.892
MDP0000256775 Malus x domestica MDP0000256775 N 0.892
MDP0000243086 Malus x domestica MDP0000243086 N 0.939
MDP0000220601 Malus x domestica MDP0000220601 N 0.916
MDP0000214614 Malus x domestica MDP0000214614 N 0.718
MDP0000164538 Malus x domestica MDP0000164538 N 0.776
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
MDP0000120231 Malus x domestica MDP0000120231 N 0.880
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.928
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.880
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.880
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.902
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.902
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.890
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.890
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.902
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.904
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.904
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.951
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.747
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.915
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.855
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.854
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.890
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.902
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.904
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.747
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
PK20504.1 Cannabis sativa PK20504.1 N 0.729
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.791
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.867
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.902
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.902
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.902
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.724
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.771
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.929
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.929
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.800
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.897
30169.m006472 Ricinus communis 30169.m006472 N 0.788
30169.m006471 Ricinus communis 30169.m006471 N 0.952
SB08G001980 Sorghum bicolor Sb08g001980 N 0.892
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
SB02G043180 Sorghum bicolor Sb02g043180 N 0.890
SB01G036490 Sorghum bicolor Sb01g036490 N 0.915
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.869
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.791
PK18074.1 Cannabis sativa PK18074.1 N 0.776