MDP0000259773 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000259773 T01104_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000259773 CCCH ZF 11 32
MDP0000259773 RRM 155 214

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.744
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.843
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.735
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.843
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.831
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.843
mgf014647m Mimulus guttatus mgf014647m N 0.831
mgf002273m Mimulus guttatus mgf002273m N 0.753
mgf000973m Mimulus guttatus mgf000973m N 0.765
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.892
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.892
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.736
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.892
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.892
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.736
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.711
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.738
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.819
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.821
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.831
ppa023263m Prunus persica ppa023263m N 0.904
ppa003564m Prunus persica ppa003564m N 0.000
ppa002413m Prunus persica ppa002413m N 0.833
MDP0000906147 Malus x domestica MDP0000906147 N 0.000
MDP0000256775 Malus x domestica MDP0000256775 N 1.000
MDP0000243086 Malus x domestica MDP0000243086 N 0.916
MDP0000220601 Malus x domestica MDP0000220601 N 0.976
MDP0000214614 Malus x domestica MDP0000214614 N 0.000
MDP0000214403 Malus x domestica MDP0000214403 N 0.000
MDP0000164538 Malus x domestica MDP0000164538 N 0.733
MDP0000120462 Malus x domestica MDP0000120462 N 0.798
MDP0000120231 Malus x domestica MDP0000120231 N 0.810
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.892
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.733
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.701
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.892
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.880
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.880
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.843
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.831
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.843
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.833
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.892
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.000
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.831
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.807
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.807
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.843
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.831
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.843
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.000
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
PK20504.1 Cannabis sativa PK20504.1 N 0.000
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.867
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.709
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.807
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.880
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.880
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.000
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.869
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.869
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.709
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
30169.m006472 Ricinus communis 30169.m006472 N 0.000
30169.m006471 Ricinus communis 30169.m006471 N 0.869
SB08G001980 Sorghum bicolor Sb08g001980 N 0.831
SB05G001540 Sorghum bicolor Sb05g001540 N 0.807
SB02G043180 Sorghum bicolor Sb02g043180 N 0.843
SB01G036490 Sorghum bicolor Sb01g036490 N 0.843
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.798
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.701
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.855
PK18074.1 Cannabis sativa PK18074.1 N 0.000