ppa023263m (Prunus persica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ppa023263m T01133_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa023263m CCCH ZF 252 273
ppa023263m RRM 402 461

Links

Other CCCH ZF,RRM family RBPs
Other Prunus persica RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.927
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.867
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.927
mgf014647m Mimulus guttatus mgf014647m N 0.880
mgf002273m Mimulus guttatus mgf002273m N 0.812
mgf000973m Mimulus guttatus mgf000973m N 0.798
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.988
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.988
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.793
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.988
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.988
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.793
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.723
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.747
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.702
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.786
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.771
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.927
ppa003564m Prunus persica ppa003564m N 0.706
ppa002413m Prunus persica ppa002413m N 0.892
ppa002383m Prunus persica ppa002383m N 0.788
MDP0000259773 Malus x domestica MDP0000259773 N 0.904
MDP0000256775 Malus x domestica MDP0000256775 N 0.904
MDP0000220601 Malus x domestica MDP0000220601 N 0.928
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
MDP0000164538 Malus x domestica MDP0000164538 N 0.776
MDP0000120462 Malus x domestica MDP0000120462 N 0.880
MDP0000120231 Malus x domestica MDP0000120231 N 0.892
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.964
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.767
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.759
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.904
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.892
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.963
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.915
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.915
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.927
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.927
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.915
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.916
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.916
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.988
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.735
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.890
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.843
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.890
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.927
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.915
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.916
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.735
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
PK20504.1 Cannabis sativa PK20504.1 N 0.718
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.880
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.915
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.915
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.713
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.940
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.940
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.776
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.908
30169.m006472 Ricinus communis 30169.m006472 N 0.765
30169.m006471 Ricinus communis 30169.m006471 N 0.964
SB08G001980 Sorghum bicolor Sb08g001980 N 0.867
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
SB02G043180 Sorghum bicolor Sb02g043180 N 0.927
SB01G036490 Sorghum bicolor Sb01g036490 N 0.927
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.869
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.767
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.939
PK18074.1 Cannabis sativa PK18074.1 N 0.753