pcbp3 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000054378 T18628_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.894
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.787
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.787
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.766
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000016097 KH 17 77
ENSDARP00000016097 KH 101 164
ENSDARP00000044385 KH 32 76
ENSDARP00000044385 KH 100 163
ENSDARP00000044385 KH 267 329
ENSDARP00000048892 KH 32 76
ENSDARP00000048892 KH 100 163
ENSDARP00000048892 KH 267 329

Links

Other KH family RBPs
Other Danio rerio RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP2 Homo sapiens ENSG00000197111 D 0.826
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.766
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.984
pcbp2 Danio rerio ENSDARG00000013184 D 0.787
PCBP1 Homo sapiens ENSG00000169564 D 0.766
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.861
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.898
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.787
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.857
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.761
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.755
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.787
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.787
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.766
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.965
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.787
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.787
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.971
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.924
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.766
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.894
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.809
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.787
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.741
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.787
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.894
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.766
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.787
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.766
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.992
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.880
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.827
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.787
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.782
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.766
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.983
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.855
AAH41241 Xenopus laevis AAH41241 I 0.782
AAH84195 Xenopus laevis AAH84195 I 0.782
CAB50743 Xenopus laevis CAB50743 I 0.782
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.776
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.766
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.808
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.894
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.713
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.787
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.984
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.766
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.787
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.856
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.711
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.904
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.761
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.904
CAD29864 Xenopus laevis CAD29864 I 0.782
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.814
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.787
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.894
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.766
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.766
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.787
LOC100050579 Equus caballus ENSECAG00000002544 I 0.766
LOC100050101 Equus caballus ENSECAG00000012413 I 0.894
PCBP2 Equus caballus ENSECAG00000022389 I 0.787
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.782
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.894
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.734
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.787
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.894
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.851
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.787
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.883
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.787
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.745
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.894
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.739
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.761
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.711
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.846
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.766
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.766
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.787
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.899
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.894
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.702
PCBP3 Gallus gallus ENSGALG00000004394 I 0.851
PCBP3 Gallus gallus ENSGALG00000013155 I 0.856
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.700
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.766
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.745
PCBP3 Felis catus ENSFCAG00000014812 I 0.924
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.787
PCBP4 Homo sapiens ENSG00000090097 I 0.792
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.894
PCBP3 Homo sapiens ENSG00000183570 I 0.894
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.965
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.894
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.771
pes-4 Caenorhabditis elegans Y119D3B.17 N 0.704
PCBP4 Danio rerio ENSDARG00000024276 N 0.832
PHUM522820 Pediculus humanus PHUM522820 N 0.808
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 0.984
AAH74333 Xenopus laevis AAH74333 N 0.984
CRE26806 Caenorhabditis remanei CRE26806 N 0.720
AAI33216 Xenopus laevis AAI33216 N 0.976
CBN14493 Caenorhabditis brenneri CBN14493 N 0.720
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.864
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.896
LOC426023 Gallus gallus ENSGALG00000013313 N 0.896
zgc:110045 Danio rerio ENSDARG00000057141 N 0.888
ENSMGAG00000003191 Meleagris gallopavo ENSMGAG00000003191 N 0.832
PCBP3 Sorex araneus ENSSARG00000007629 N 0.720
PCBP3 Spermophilus tridecemlineatus ENSSTOG00000007178 N 0.832
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.816
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.912
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 0.984
PCBP3 Canis familiaris ENSCAFG00000011907 N 0.984
PCBP3 Tarsius syrichta ENSTSYG00000005254 N 0.848
CBG15694 Caenorhabditis briggsae CBG15694 N 0.720
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.896