CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI2G39240
(
Brachypodium distachyon
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
BRADI2G39240
T24059_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI2G39240.1
PUF
552
586
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
BRADI2G39240.1
PUF
588
622
EIMPQALTLMTDVFGNYVVQKFFEHGSTTQIKELS
BRADI2G39240.1
PUF
624
658
QLIGRVLALSLQMYGCRVIQKAIEVVDLAQQTKMV
BRADI2G39240.1
PUF
660
694
ELDGHIMRCVRDQNGNHVIQKCIECIPQDVIQFIV
BRADI2G39240.1
PUF
696
730
TFYGQVVLLSTHPYGCRVIQRVLEHCDDPTTQQIM
BRADI2G39240.1
PUF
733
767
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERTAII
BRADI2G39240.1
PUF
769
803
KLIGQVVQMSQQKFASNVIEKCLAFGNPVERQILI
BRADI2G39240.1
PUF
813
845
SEPLEVMMKDQFANYVVQKVLETCDDQQREMIL
Links
Other
PUF
family RBPs
Other
Brachypodium distachyon
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gm1.300904
Emiliania huxleyi
gm1.300904
N
0.000
PTTG_10688
Puccinia triticina
PTTG_10688
N
0.000
PTTG_10645
Puccinia triticina
PTTG_10645
N
0.000
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.000
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.000
PTTG_10278
Puccinia triticina
PTTG_10278
N
0.000
PTTG_10119
Puccinia triticina
PTTG_10119
N
0.000
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.000
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.000
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.000
PTTG_10706
Puccinia triticina
PTTG_10706
N
0.000
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.000
161590
Helobdella robusta
161590
N
0.000
TcIL3000.0.60500
Trypanosoma congolense
TcIL3000.0.60500
N
0.000
TcIL3000.0.47130
Trypanosoma congolense
TcIL3000.0.47130
N
0.000
EHI_007320
Entamoeba histolytica
EHI_007320
N
0.000
EDI_146150
Entamoeba dispar
EDI_146150
N
0.000
LOC_Os10g25990
Oryza sativa
LOC_Os10g25990
N
0.000
LOC_Os10g20570
Oryza sativa
LOC_Os10g20570
N
0.000
CJA16826
Caenorhabditis japonica
CJA16826
N
0.000
AT3G21030
Arabidopsis thaliana
AT3G21030-TAIR-G
N
0.000
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.000
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.000
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.000
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.000
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.000
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.000
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.000
PTTG_03398
Puccinia triticina
PTTG_03398
N
0.000
PTTG_01003
Puccinia triticina
PTTG_01003
N
0.000
PGTG_16909
Puccinia graminis
PGTG_16909
N
0.000
CPSG_04175
Coccidioides posadasii
CPSG_04175
N
0.000
CIMG_13627
Coccidioides immitis
CIMG_13627
N
0.000
PTTG_05245
Puccinia triticina
PTTG_05245
N
0.000
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.000
PTTG_08960
Puccinia triticina
PTTG_08960
N
0.000
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.000
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.000
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.000
PTTG_07053
Puccinia triticina
PTTG_07053
N
0.000
PTTG_06677
Puccinia triticina
PTTG_06677
N
0.000
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.000
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.000
PTTG_05476
Puccinia triticina
PTTG_05476
N
0.000
CC1G_11952
Coprinopsis cinerea
CC1G_11952
N
0.000