BRADI3G55540 (Brachypodium distachyon)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BRADI3G55540 T24062_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G55540.1 PUF 674 708
BRADI3G55540.1 PUF 710 744
BRADI3G55540.1 PUF 746 780
BRADI3G55540.1 PUF 782 816
BRADI3G55540.1 PUF 818 851
BRADI3G55540.1 PUF 855 889
BRADI3G55540.1 PUF 891 925
BRADI3G55540.1 PUF 938 967
BRADI3G55540.2 PUF 674 708
BRADI3G55540.2 PUF 710 744
BRADI3G55540.2 PUF 746 780
BRADI3G55540.2 PUF 782 816
BRADI3G55540.2 PUF 818 851
BRADI3G55540.2 PUF 855 874

Links

Other PUF family RBPs
Other Brachypodium distachyon RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os07g38350 Oryza sativa LOC_Os07g38350 N 0.000
LOC_Os10g37468 Oryza sativa LOC_Os10g37468 N 0.000
LOC_Os11g01700 Oryza sativa LOC_Os11g01700 N 0.000
LOC_Os11g16610 Oryza sativa LOC_Os11g16610 N 0.000
LOC_Os11g29610 Oryza sativa LOC_Os11g29610 N 0.000
LOC_Os11g35800 Oryza sativa LOC_Os11g35800 N 0.000
LOC_Os11g46090 Oryza sativa LOC_Os11g46090 N 0.000
LOC_Os12g03304 Oryza sativa LOC_Os12g03304 N 0.000
LOC_Os12g09400 Oryza sativa LOC_Os12g09400 N 0.000
LOC_Os12g10500 Oryza sativa LOC_Os12g10500 N 0.000
LOC_Os10g36460 Oryza sativa LOC_Os10g36460 N 0.000
LOC_Os10g34890 Oryza sativa LOC_Os10g34890 N 0.000
LOC_Os10g33570 Oryza sativa LOC_Os10g33570 N 0.000
LOC_Os07g39380 Oryza sativa LOC_Os07g39380 N 0.000
LOC_Os08g05150 Oryza sativa LOC_Os08g05150 N 0.000
LOC_Os08g06850 Oryza sativa LOC_Os08g06850 N 0.000
LOC_Os08g14170 Oryza sativa LOC_Os08g14170 N 0.000
LOC_Os08g14340 Oryza sativa LOC_Os08g14340 N 0.000
LOC_Os09g18080 Oryza sativa LOC_Os09g18080 N 0.000
LOC_Os10g03300 Oryza sativa LOC_Os10g03300 N 0.000
LOC_Os10g19290 Oryza sativa LOC_Os10g19290 N 0.000
LOC_Os10g31220 Oryza sativa LOC_Os10g31220 N 0.000
LOC_Os12g11730 Oryza sativa LOC_Os12g11730 N 0.000
LOC_Os12g11970 Oryza sativa LOC_Os12g11970 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.000
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.000
fgenesh2_pg.3_#_606 Fragilariopsis cylindrus fgenesh2_pg.3_#_606 N 0.000
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.000
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.000
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
30128.m009003 Ricinus communis 30128.m009003 N 0.000
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.000
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.000
LOC_Os12g12040 Oryza sativa LOC_Os12g12040 N 0.000
LOC_Os12g15290 Oryza sativa LOC_Os12g15290 N 0.000
LOC_Os12g16730 Oryza sativa LOC_Os12g16730 N 0.000
LOC_Os12g18250 Oryza sativa LOC_Os12g18250 N 0.000
LOC_Os12g26520 Oryza sativa LOC_Os12g26520 N 0.000
LOC_Os12g34580 Oryza sativa LOC_Os12g34580 N 0.000
LOC_Os12g36260 Oryza sativa LOC_Os12g36260 N 0.000
LOC_Os12g41080 Oryza sativa LOC_Os12g41080 N 0.000
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.000
ppa001778m Prunus persica ppa001778m N 0.000
PTTG_10751 Puccinia triticina PTTG_10751 N 0.000
LOC_Os01g32990 Oryza sativa LOC_Os01g32990 N 0.000
LOC_Os01g37410 Oryza sativa LOC_Os01g37410 N 0.000
LOC_Os01g55660 Oryza sativa LOC_Os01g55660 N 0.000
LOC_Os01g58810 Oryza sativa LOC_Os01g58810 N 0.000
LOC_Os02g14370 Oryza sativa LOC_Os02g14370 N 0.000
LOC_Os02g18310 Oryza sativa LOC_Os02g18310 N 0.000
LOC_Os02g27320 Oryza sativa LOC_Os02g27320 N 0.000
LOC_Os03g02500 Oryza sativa LOC_Os03g02500 N 0.000
LOC_Os03g14349 Oryza sativa LOC_Os03g14349 N 0.000
LOC_Os01g28760 Oryza sativa LOC_Os01g28760 N 0.000
LOC_Os01g28490 Oryza sativa LOC_Os01g28490 N 0.000
LOC_Os01g16270 Oryza sativa LOC_Os01g16270 N 0.000
PTTG_11057 Puccinia triticina PTTG_11057 N 0.000
PK16552.1 Cannabis sativa PK16552.1 N 0.000
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.000
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.000
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.000
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.000
LOC_Os01g06810 Oryza sativa LOC_Os01g06810 N 0.000
LOC_Os01g09050 Oryza sativa LOC_Os01g09050 N 0.000
LOC_Os03g29130 Oryza sativa LOC_Os03g29130 N 0.000
LOC_Os03g31200 Oryza sativa LOC_Os03g31200 N 0.000
LOC_Os06g19040 Oryza sativa LOC_Os06g19040 N 0.000
LOC_Os06g23860 Oryza sativa LOC_Os06g23860 N 0.000
LOC_Os06g25910 Oryza sativa LOC_Os06g25910 N 0.000
LOC_Os06g29600 Oryza sativa LOC_Os06g29600 N 0.000
LOC_Os06g34090 Oryza sativa LOC_Os06g34090 N 0.000
LOC_Os06g35840 Oryza sativa LOC_Os06g35840 N 0.000
LOC_Os06g42300 Oryza sativa LOC_Os06g42300 N 0.000
LOC_Os06g47810 Oryza sativa LOC_Os06g47810 N 0.000
LOC_Os07g27900 Oryza sativa LOC_Os07g27900 N 0.000
LOC_Os06g13500 Oryza sativa LOC_Os06g13500 N 0.000
LOC_Os06g05460 Oryza sativa LOC_Os06g05460 N 0.000
LOC_Os05g27770 Oryza sativa LOC_Os05g27770 N 0.000
LOC_Os03g31620 Oryza sativa LOC_Os03g31620 N 0.000
LOC_Os03g56676 Oryza sativa LOC_Os03g56676 N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.000
LOC_Os04g13240 Oryza sativa LOC_Os04g13240 N 0.000
LOC_Os04g19950 Oryza sativa LOC_Os04g19950 N 0.000
LOC_Os04g34960 Oryza sativa LOC_Os04g34960 N 0.000
LOC_Os05g07190 Oryza sativa LOC_Os05g07190 N 0.000
LOC_Os05g10510 Oryza sativa LOC_Os05g10510 N 0.000
LOC_Os05g15810 Oryza sativa LOC_Os05g15810 N 0.000
LOC_Os07g36270 Oryza sativa LOC_Os07g36270 N 0.000