CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.138830
(
Cucumis sativus
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Cucsa.138830
T24710_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.138830.1
PUF
704
738
EIAGHVFEFSGDQYGSRFIQQKLETATADEKNMIY
Cucsa.138830.1
PUF
741
773
IMPQALALMTDVFGNYVIQKFFEHGLAAQRREL
Cucsa.138830.1
PUF
776
810
KLFGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMV
Cucsa.138830.1
PUF
812
846
ELDGHVMRCVRDQNGNHVIQKCIECVPESAIHFIV
Cucsa.138830.1
PUF
848
882
TFFDQVVTLSTHPYGCRVIQRVLEHCKDETTQSRV
Cucsa.138830.1
PUF
885
919
EILGSVSMLAQDQYGNYVVQHVLEHGKSHERSAII
Cucsa.138830.1
PUF
921
955
ELAGRIVQMSQQKFASNVVEKCLTFGGPTERQLLV
Cucsa.138830.1
PUF
968
997
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Cucumis sativus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.000
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.000
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.000
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.000
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.000
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.000
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.000
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.000
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.000
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.000
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.000
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.000
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.000
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.000
CAC95017
Xenopus laevis
CAC95017
N
0.000