Cucsa.138830 (Cucumis sativus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Cucsa.138830 T24710_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.138830.1 PUF 704 738
Cucsa.138830.1 PUF 741 773
Cucsa.138830.1 PUF 776 810
Cucsa.138830.1 PUF 812 846
Cucsa.138830.1 PUF 848 882
Cucsa.138830.1 PUF 885 919
Cucsa.138830.1 PUF 921 955
Cucsa.138830.1 PUF 968 997

Links

Other PUF family RBPs
Other Cucumis sativus RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.764
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.733
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.919
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.913
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.909
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.909
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.909
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.905
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.740
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.783
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.768
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.783
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.734
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.745
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.743
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.819
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.767
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.905
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.771
mgf011401m Mimulus guttatus mgf011401m N 0.728
ppa000627m Prunus persica ppa000627m N 0.923
ppa000626m Prunus persica ppa000626m N 0.851
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.708
MDP0000776183 Malus x domestica MDP0000776183 N 0.837
MDP0000319167 Malus x domestica MDP0000319167 N 0.916
MDP0000314338 Malus x domestica MDP0000314338 N 0.840
MDP0000191652 Malus x domestica MDP0000191652 N 0.879
MDP0000176743 Malus x domestica MDP0000176743 N 0.732
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.772
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.894
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.891
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.729
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.728
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.788
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
mgf015734m Mimulus guttatus mgf015734m N 0.891
mgf015234m Mimulus guttatus mgf015234m N 0.818
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.905
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.905
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.909
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.844
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.902
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.845
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.743
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.859
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.869
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.725
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.788
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.788
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.799
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.789
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.721
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.866
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.851
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.858
PK21390.1 Cannabis sativa PK21390.1 N 0.923
PK01617.1 Cannabis sativa PK01617.1 N 0.758
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.789
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.739
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.865
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.722
30143.m001164 Ricinus communis 30143.m001164 N 0.855
30143.m001162 Ricinus communis 30143.m001162 N 0.812
29595.m000292 Ricinus communis 29595.m000292 N 0.756
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.869
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.714
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
SB04G037410 Sorghum bicolor Sb04g037410 N 0.736
SB03G039600 Sorghum bicolor Sb03g039600 N 0.840
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.743
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.858
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.905
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.851
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.753
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.884
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.799
PK00601.1 Cannabis sativa PK00601.1 N 0.848