mgf015234m (Mimulus guttatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 mgf015234m T24929_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf015234m PUF 503 537
mgf015234m PUF 539 573
mgf015234m PUF 575 609
mgf015234m PUF 611 645
mgf015234m PUF 647 681
mgf015234m PUF 684 718
mgf015234m PUF 720 754
mgf015234m PUF 767 796

Links

Other PUF family RBPs
Other Mimulus guttatus RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.764
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.818
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.815
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.815
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.812
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.812
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.808
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.747
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.747
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.739
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.754
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.712
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.720
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.746
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.859
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.818
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.761
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.825
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.744
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.753
ppa000627m Prunus persica ppa000627m N 0.818
ppa000626m Prunus persica ppa000626m N 0.888
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.701
MDP0000776183 Malus x domestica MDP0000776183 N 0.866
MDP0000319167 Malus x domestica MDP0000319167 N 0.815
MDP0000314338 Malus x domestica MDP0000314338 N 0.873
MDP0000191652 Malus x domestica MDP0000191652 N 0.767
MDP0000176743 Malus x domestica MDP0000176743 N 0.725
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.801
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.818
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.804
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.751
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.739
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.817
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.820
mgf015734m Mimulus guttatus mgf015734m N 0.818
mgf011401m Mimulus guttatus mgf011401m N 0.710
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.825
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.833
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.837
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.815
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.837
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.852
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.722
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.779
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.783
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.743
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.813
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.813
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.832
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.821
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.728
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.790
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.779
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.779
PK21390.1 Cannabis sativa PK21390.1 N 0.829
PK01617.1 Cannabis sativa PK01617.1 N 0.776
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.821
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.754
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.887
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.736
30143.m001164 Ricinus communis 30143.m001164 N 0.891
30143.m001162 Ricinus communis 30143.m001162 N 0.855
29595.m000292 Ricinus communis 29595.m000292 N 0.768
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.783
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.721
SB09G001090 Sorghum bicolor Sb09g001090 N 0.824
SB04G037410 Sorghum bicolor Sb04g037410 N 0.743
SB03G039600 Sorghum bicolor Sb03g039600 N 0.815
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.743
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.895
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.801
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.880
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.746
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.797
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.832
PK00601.1 Cannabis sativa PK00601.1 N 0.870