mgf015734m (Mimulus guttatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 mgf015734m T24930_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf015734m PUF 643 677
mgf015734m PUF 679 712
mgf015734m PUF 715 749
mgf015734m PUF 751 785
mgf015734m PUF 787 819
mgf015734m PUF 824 858
mgf015734m PUF 860 894
mgf015734m PUF 907 936

Links

Other PUF family RBPs
Other Mimulus guttatus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.775
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.745
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.901
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.895
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.891
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.891
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.891
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.884
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.761
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.775
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.774
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.781
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.739
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.755
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.743
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.804
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.764
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.897
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.788
mgf011401m Mimulus guttatus mgf011401m N 0.736
ppa000627m Prunus persica ppa000627m N 0.897
ppa000626m Prunus persica ppa000626m N 0.841
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.705
MDP0000776183 Malus x domestica MDP0000776183 N 0.826
MDP0000319167 Malus x domestica MDP0000319167 N 0.886
MDP0000314338 Malus x domestica MDP0000314338 N 0.829
MDP0000191652 Malus x domestica MDP0000191652 N 0.853
MDP0000176743 Malus x domestica MDP0000176743 N 0.739
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.779
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.876
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.886
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.744
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.735
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.773
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.777
mgf015234m Mimulus guttatus mgf015234m N 0.818
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.897
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.901
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.895
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.825
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.895
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.852
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.742
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.837
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.847
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.735
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.791
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.791
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.789
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.778
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.717
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.848
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.826
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.847
PK21390.1 Cannabis sativa PK21390.1 N 0.880
PK01617.1 Cannabis sativa PK01617.1 N 0.780
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.778
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.732
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.851
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.732
30143.m001164 Ricinus communis 30143.m001164 N 0.848
30143.m001162 Ricinus communis 30143.m001162 N 0.812
29595.m000292 Ricinus communis 29595.m000292 N 0.753
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.847
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.714
SB09G001090 Sorghum bicolor Sb09g001090 N 0.781
SB04G037410 Sorghum bicolor Sb04g037410 N 0.738
SB03G039600 Sorghum bicolor Sb03g039600 N 0.825
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.754
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.855
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.880
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.840
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.760
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.865
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.789
PK00601.1 Cannabis sativa PK00601.1 N 0.855