Medtr2g117180 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr2g117180 T24973_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g117180.1 PUF 712 746
Medtr2g117180.1 PUF 748 781
Medtr2g117180.1 PUF 784 818
Medtr2g117180.1 PUF 820 854
Medtr2g117180.1 PUF 856 888
Medtr2g117180.1 PUF 893 927
Medtr2g117180.1 PUF 929 963
Medtr2g117180.1 PUF 976 1005
Medtr2g117180.2 PUF 1 27
Medtr2g117180.2 PUF 40 69

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YTHDC1 Homo sapiens ENSG00000083896 D 0.000
XP_001181366.1 Strongylocentrotus purpuratus XP_001181366.1 I 0.000
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.000
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.000
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.000
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.000
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.000
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.000
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.000
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.000
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.000
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.000
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.000
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.000
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.000
XP_783255.2 Strongylocentrotus purpuratus XP_783255.2 I 0.000
PHUM305930 Pediculus humanus PHUM305930 I 0.000
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.000
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.000
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.000
nasonia_NCBI_hmm460384 Nasonia vitripennis nasonia_NCBI_hmm460384 I 0.000
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.000
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.000
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.000
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.000
ythdc1 Danio rerio ENSDARG00000051953 I 0.000
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.000
LOC100066303 Equus caballus ENSECAG00000018303 I 0.000
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.000
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.000
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.000
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.000
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.000
GK20378 Drosophila willistoni FBgn0222375 N 0.000
GE20687 Drosophila yakuba FBgn0237992 N 0.000
GA28277-RA Drosophila pseudoobscura FBgn0249640 N 0.000
AAEL002272 Aedes aegypti AAEL002272 N 0.000
e_gw.768.2.1 Branchiostoma floridae e_gw.768.2.1 N 0.000
PASA_GEN_12100033 Daphnia pulex PASA_GEN_12100033 N 0.000
BGIBMGA011690 Bombyx mori BGIBMGA011690 N 0.000
GJ13107 Drosophila virilis FBgn0200334 N 0.000
GD13329 Drosophila simulans FBgn0185047 N 0.000
CpipJ_CPIJ007352 Culex pipiens CpipJ_CPIJ007352 N 0.000
CPIJ007352 Culex quinquefasciatus CPIJ007352 N 0.000
YT521-B Drosophila melanogaster FBgn0027616 N 0.000
GF10271 Drosophila ananassae FBgn0087312 N 0.000
GG14260 Drosophila erecta FBgn0106521 N 0.000
GH15361 Drosophila grimshawi FBgn0122833 N 0.000
GH24419 Drosophila grimshawi FBgn0131875 N 0.000
GI12962 Drosophila mojavensis FBgn0135719 N 0.000
AGAP005940 Anopheles gambiae AGAP005940 N 0.000
GM14053 Drosophila sechellia FBgn0168982 N 0.000