MDP0000176743 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000176743 T25190_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000176743 PUF 935 968
MDP0000176743 PUF 970 1004
MDP0000176743 PUF 1006 1040
MDP0000176743 PUF 1042 1076
MDP0000176743 PUF 1078 1112
MDP0000176743 PUF 1116 1149
MDP0000176743 PUF 1151 1185
MDP0000176743 PUF 1198 1227

Links

Other PUF family RBPs
Other Malus x domestica RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.909
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.744
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.744
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.740
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.744
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.744
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.866
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.718
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.717
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.717
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.715
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.727
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.858
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.769
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.732
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.854
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.732
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.732
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.750
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.858
ppa000627m Prunus persica ppa000627m N 0.739
ppa000626m Prunus persica ppa000626m N 0.762
MDP0000776183 Malus x domestica MDP0000776183 N 0.747
MDP0000319167 Malus x domestica MDP0000319167 N 0.736
MDP0000314338 Malus x domestica MDP0000314338 N 0.757
MDP0000119814 Malus x domestica MDP0000119814 N 0.865
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.720
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.736
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.750
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.848
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.749
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.749
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.735
mgf015734m Mimulus guttatus mgf015734m N 0.739
mgf015234m Mimulus guttatus mgf015234m N 0.725
mgf011401m Mimulus guttatus mgf011401m N 0.807
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.728
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.746
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.729
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.772
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.751
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.783
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.836
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.717
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.710
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.775
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.756
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.756
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.743
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.736
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.789
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.714
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.721
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.714
PK21390.1 Cannabis sativa PK21390.1 N 0.743
PK01617.1 Cannabis sativa PK01617.1 N 0.859
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.736
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.771
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.764
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.833
30143.m001164 Ricinus communis 30143.m001164 N 0.758
30143.m001162 Ricinus communis 30143.m001162 N 0.729
29595.m000292 Ricinus communis 29595.m000292 N 0.851
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.710
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.782
SB09G001090 Sorghum bicolor Sb09g001090 N 0.738
SB04G037410 Sorghum bicolor Sb04g037410 N 0.760
SB03G039600 Sorghum bicolor Sb03g039600 N 0.779
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.815
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.772
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.732
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.761
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.833
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.722
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.743
PK00601.1 Cannabis sativa PK00601.1 N 0.765