MDP0000314338 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000314338 T25204_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000314338 PUF 131 165
MDP0000314338 PUF 167 201
MDP0000314338 PUF 203 237
MDP0000314338 PUF 239 273
MDP0000314338 PUF 275 309
MDP0000314338 PUF 312 345
MDP0000314338 PUF 348 382
MDP0000314338 PUF 395 424

Links

Other PUF family RBPs
Other Malus x domestica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.801
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.848
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.848
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.848
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.844
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.841
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.769
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.780
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.764
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.779
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.752
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.749
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.764
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.891
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.840
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.793
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.844
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.762
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.782
ppa000627m Prunus persica ppa000627m N 0.844
ppa000626m Prunus persica ppa000626m N 0.964
MDP0000776183 Malus x domestica MDP0000776183 N 0.978
MDP0000319167 Malus x domestica MDP0000319167 N 0.847
MDP0000176743 Malus x domestica MDP0000176743 N 0.757
MDP0000119814 Malus x domestica MDP0000119814 N 0.728
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.836
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.833
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.773
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.739
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.838
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.842
mgf015734m Mimulus guttatus mgf015734m N 0.829
mgf015234m Mimulus guttatus mgf015234m N 0.873
mgf011401m Mimulus guttatus mgf011401m N 0.725
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.847
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.855
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.866
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.895
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.744
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.812
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.808
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.746
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.835
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.835
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.853
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.842
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.746
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.819
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.804
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.804
PK21390.1 Cannabis sativa PK21390.1 N 0.855
PK01617.1 Cannabis sativa PK01617.1 N 0.798
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.865
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.842
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.920
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.765
30143.m001164 Ricinus communis 30143.m001164 N 0.931
30143.m001162 Ricinus communis 30143.m001162 N 0.884
29595.m000292 Ricinus communis 29595.m000292 N 0.783
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.808
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.739
SB09G001090 Sorghum bicolor Sb09g001090 N 0.845
SB03G039600 Sorghum bicolor Sb03g039600 N 0.851
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.750
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.935
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.830
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.924
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.764
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.830
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.853
PK00601.1 Cannabis sativa PK00601.1 N 0.906