ENSDORG00000011155 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000011155 T36504_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.787
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.787
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.787
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.773
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000010483 RRM 37 106
ENSDORP00000010483 RRM 128 188

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.000
Pc22g17020 Penicillium chrysogenum Pc22g17020 N 0.000
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.000
fgenesh1_pg.C_scaffold_4000265 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000265 N 0.000
fgenesh1_pg.C_scaffold_1000567 Sporobolomyces roseus fgenesh1_pg.C_scaffold_1000567 N 0.000
estExt_Genewise1Plus.C_200094 Postia placenta estExt_Genewise1Plus.C_200094 N 0.000
estExt_fgenesh1_pg.C_130152 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_130152 N 0.000
e_gw1.87.91.1 Postia placenta e_gw1.87.91.1 N 0.000
e_gw1.1.503.1 Phycomyces blakesleeanus e_gw1.1.503.1 N 0.000
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.000
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.000
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.000
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.000
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.000
PMAA_027560 Penicillium marneffei PMAA_027560 N 0.000