PCHAS_144180 (Plasmodium chabaudi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PCHAS_144180 T47351_0.6 EuPathDB (2010-Sep-21)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PCHAS_144180 RRM 16 83

Links

Other RRM family RBPs
Other Plasmodium chabaudi RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GD13137 Drosophila simulans FBgn0184859 N 0.765
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.913
PVX_123875 Plasmodium vivax PVX_123875 N 0.913
PY07239 Plasmodium yoelii PY07239 N 0.899
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.735
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.735
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.735
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.725
29868.m000351 Ricinus communis 29868.m000351 N 0.725
68671 Helobdella robusta 68671 N 0.725
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.725
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.735
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.824
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.710
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.794
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.797
PFL1200c Plasmodium falciparum PFL1200c N 0.913
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.971
GJ12004 Drosophila virilis FBgn0199256 N 0.765
GK17258 Drosophila willistoni FBgn0219257 N 0.765
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.725
ISCW024082 Ixodes scapularis ISCW024082 N 0.768
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.754
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.725
PHUM617060 Pediculus humanus PHUM617060 N 0.783
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.725
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.710
PPA24922 Pristionchus pacificus PPA24922 N 0.739
SB01G003790 Sorghum bicolor Sb01g003790 N 0.739
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.750
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.768
CMU_001200 Cryptosporidium muris CMU_001200 N 0.783
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.735
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.739
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.739
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.768
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.750
EDO06533.1 Babesia bovis EDO06533.1 N 0.870
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.779
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.710
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.710
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.739
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.725
MDP0000185506 Malus x domestica MDP0000185506 N 0.725
Minc01156 Meloidogyne incognita Minc01156 N 0.725
ppa013405m Prunus persica ppa013405m N 0.725
ppa013407m Prunus persica ppa013407m N 0.725
TA13725 Theileria annulata TA13725 N 0.870
TP02_0539 Theileria parva TP02_0539 N 0.826
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.725
160.m00066 Tetrahymena thermophila 160.m00066 N 0.706
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.750
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.739
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.754
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.735
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.739
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.768
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.765
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.706
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.765
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.750
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.725
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.735
mgf016428m Mimulus guttatus mgf016428m N 0.750
s_454910 Phytophthora sojae s_454910 N 0.779
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.739
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.739
AAH57709 Xenopus laevis AAH57709 N 0.739
GM13852 Drosophila sechellia FBgn0168783 N 0.765
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.768
CBG06987 Caenorhabditis briggsae CBG06987 N 0.710
CBN08400 Caenorhabditis brenneri CBN08400 N 0.710
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.768
CRE22109 Caenorhabditis remanei CRE22109 N 0.710
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.768
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.768
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.768
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.768
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.754
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.768
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.768
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.754
sf3b14 Danio rerio ENSDARG00000009753 N 0.768
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.768
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.768
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.710
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.725
LOAG_04189 Loa loa LOAG_04189 N 0.765
PITG_10282 Phytophthora infestans PITG_10282 N 0.779
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.721
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.735
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.768
PK21780.1 Cannabis sativa PK21780.1 N 0.725
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.797
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.797
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.783
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.797
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.797
AAEL005909 Aedes aegypti AAEL005909 N 0.768
AGAP002780 Anopheles gambiae AGAP002780 N 0.768
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.750
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.754
LOC100056247 Equus caballus ENSECAG00000015618 N 0.768
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.768
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.768
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.768
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.783
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.783
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.768
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.768
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.768
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.754
CG13298 Drosophila melanogaster FBgn0035692 N 0.765
GE20495 Drosophila yakuba FBgn0068445 N 0.765
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.765
GF10910 Drosophila ananassae FBgn0087950 N 0.765
GG14070 Drosophila erecta FBgn0106332 N 0.765
GH16287 Drosophila grimshawi FBgn0123758 N 0.765
GI13232 Drosophila mojavensis FBgn0135989 N 0.765
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.768
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.768
AC008073.5 Homo sapiens ENSG00000115128 N 0.768
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.768
SF3B14 Gallus gallus ENSGALG00000016501 N 0.768
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.768
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.768
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.768
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.768
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.739
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.768
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.768
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.768
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.754
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.768
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.768
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.768
GL22529 Drosophila persimilis FBgn0160121 N 0.765