ppa002620m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa002620m T58332_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa002620m RRM 34 104
ppa002620m RRM 122 191
ppa002620m RRM 213 282
ppa002620m RRM 316 385

Links

Other RRM family RBPs
Other Prunus persica RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002618m Prunus persica ppa002618m N 1.000
mgf005294m Mimulus guttatus mgf005294m N 0.730
mgf004973m Mimulus guttatus mgf004973m N 0.840
mgf004596m Mimulus guttatus mgf004596m N 0.719
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.722
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.843
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.836
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.833
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.776
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.762
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.826
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.737
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.744
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.751
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.737
mgf009542m Mimulus guttatus mgf009542m N 0.829
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.747
ppa002607m Prunus persica ppa002607m N 0.833
ppa002584m Prunus persica ppa002584m N 0.712
MDP0000497543 Malus x domestica MDP0000497543 N 0.819
MDP0000286821 Malus x domestica MDP0000286821 N 0.715
MDP0000283985 Malus x domestica MDP0000283985 N 0.943
MDP0000253709 Malus x domestica MDP0000253709 N 0.822
MDP0000212007 Malus x domestica MDP0000212007 N 0.715
MDP0000156895 Malus x domestica MDP0000156895 N 0.822
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.740
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.858
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.808
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.826
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.744
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.726
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.822
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.804
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.744
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.808
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.865
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.733
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.730
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.713
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.762
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.755
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.744
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.737
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.701
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.726
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.747
PK02172.1 Cannabis sativa PK02172.1 N 0.822
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.755
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.762
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.833
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.815
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.815
30170.m013847 Ricinus communis 30170.m013847 N 0.854
29801.m003152 Ricinus communis 29801.m003152 N 0.822
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.701
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.751
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.730
SB06G021850 Sorghum bicolor Sb06g021850 N 0.737
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.722
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.854
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.840
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.868
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.833
PK00659.1 Cannabis sativa PK00659.1 N 0.783