MDP0000906147 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000906147 T01113_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000906147 CCCH ZF 173 198
MDP0000906147 RRM 341 401

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006471 Ricinus communis 30169.m006471 N 0.000
30169.m006472 Ricinus communis 30169.m006472 N 0.000
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.000
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.000
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.000
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.000
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.000
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.897
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.000
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.000
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.000
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.000
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.000
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.000
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.000
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.000
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.000
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.000
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.000
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.874
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.000
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.000
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.000
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.000
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.000
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.000
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.000
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.000
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.000
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.000
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.000
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.000
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.000
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.000
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.000
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.000
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.000
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.713
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.000
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.000
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.000
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.000
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.000
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.000
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.000
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.000
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.000
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.000
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.000
MDP0000120231 Malus x domestica MDP0000120231 N 0.000
MDP0000120462 Malus x domestica MDP0000120462 N 0.701
MDP0000164538 Malus x domestica MDP0000164538 N 0.000
MDP0000214614 Malus x domestica MDP0000214614 N 0.943
MDP0000220601 Malus x domestica MDP0000220601 N 0.000
MDP0000243086 Malus x domestica MDP0000243086 N 0.000
MDP0000256775 Malus x domestica MDP0000256775 N 0.000
MDP0000259773 Malus x domestica MDP0000259773 N 0.000
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.000
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.701
mgf000973m Mimulus guttatus mgf000973m N 0.000
mgf002273m Mimulus guttatus mgf002273m N 0.000
mgf014647m Mimulus guttatus mgf014647m N 0.000
PK18074.1 Cannabis sativa PK18074.1 N 0.000
PK20504.1 Cannabis sativa PK20504.1 N 0.851
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.000
ppa002383m Prunus persica ppa002383m N 0.701
ppa002413m Prunus persica ppa002413m N 0.000
ppa003564m Prunus persica ppa003564m N 0.943
ppa019338m Prunus persica ppa019338m N 0.782
ppa023263m Prunus persica ppa023263m N 0.000
SB01G036490 Sorghum bicolor Sb01g036490 N 0.000
SB02G043180 Sorghum bicolor Sb02g043180 N 0.000
SB05G001540 Sorghum bicolor Sb05g001540 N 0.000
SB08G001980 Sorghum bicolor Sb08g001980 N 0.713
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.000
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.000
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.000