ENSCJAG00000010572 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000010572 T16782_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.944
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.944
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.930
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.930
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.930
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.915
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000019495 CSD 8 78

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

206 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.722
146547 Helobdella robusta 146547 I 0.708
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.930
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.972
AAA49715 Xenopus laevis AAA49715 I 0.972
AAA49716 Xenopus laevis AAA49716 I 0.930
AAA49924 Xenopus laevis AAA49924 I 0.915
AAEL001375 Aedes aegypti AAEL001375 I 0.750
AAH41191 Xenopus laevis AAH41191 I 0.972
AAH42217 Xenopus laevis AAH42217 I 0.972
AAI06324 Xenopus laevis AAI06324 I 0.972
AAI30161 Xenopus laevis AAI30161 I 0.972
AAI55914 Xenopus laevis AAI55914 I 0.915
AAI55915 Xenopus laevis AAI55915 I 0.930
AAI69704 Xenopus laevis AAI69704 I 0.930
AGAP006108 Anopheles gambiae AGAP006108 I 0.750
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.819
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.819
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.819
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.722
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.792
Bm1_57515 Brugia malayi Bm1_57515 I 0.750
CAA42778 Xenopus laevis CAA42778 I 0.972
CBG02981 Caenorhabditis briggsae CBG02981 I 0.722
CBN16711 Caenorhabditis brenneri CBN16711 I 0.736
cey-1 Caenorhabditis elegans F33A8.3 I 0.736
CRE01789 Caenorhabditis remanei CRE01789 I 0.736
CSDA Loxodonta africana ENSLAFG00000017247 I 0.972
CSDA Microcebus murinus ENSMICG00000004602 I 0.845
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.972
CSDA Homo sapiens ENSG00000060138 I 0.972
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.972
CSDA Echinops telfairi ENSETEG00000002557 I 0.972
CSDA Sus scrofa ENSSSCG00000000633 I 0.972
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.972
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.972
CSDA Pan troglodytes ENSPTRG00000004681 I 0.972
CSDA Procavia capensis ENSPCAG00000001397 I 0.901
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.972
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.792
CSDA Vicugna pacos ENSVPAG00000000876 I 0.845
csda Xenopus tropicalis ENSXETG00000016239 I 0.930
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.736
Csda Mus musculus ENSMUSG00000030189 I 0.972
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.972
CSDA Monodelphis domestica ENSMODG00000018248 I 0.958
CSDA Macaca mulatta ENSMMUG00000022469 I 0.972
Csda Rattus norvegicus ENSRNOG00000005480 I 0.972
CSDA Cavia porcellus ENSCPOG00000011329 I 0.972
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.972
Csda Dipodomys ordii ENSDORG00000009103 I 0.972
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.806
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.944
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.915
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.972
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.824
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.819
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.778
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.847
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.778
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.861
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.833
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.817
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.915
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.875
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.901
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.778
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.972
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.795
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.972
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.958
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.972
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.930
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.836
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.972
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.764
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.944
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.847
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.944
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.972
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.958
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.972
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.803
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.972
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.944
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.764
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.958
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.861
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.915
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.819
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.833
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.972
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.822
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.822
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.750
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.861
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.915
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.778
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.764
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.764
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.792
GD12750 Drosophila simulans FBgn0184477 I 0.778
GE20150 Drosophila yakuba FBgn0237472 I 0.778
GF10852 Drosophila ananassae FBgn0087892 I 0.792
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
GI13673 Drosophila mojavensis FBgn0136428 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.792
GK16710 Drosophila willistoni FBgn0218712 I 0.792
GL15684 Drosophila persimilis FBgn0153288 I 0.792
GM24682 Drosophila sechellia FBgn0179545 I 0.778
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.736
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.792
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.764
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.764
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.861
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.764
ISCW005281 Ixodes scapularis ISCW005281 I 0.792
LOC100065107 Equus caballus ENSECAG00000013777 I 0.972
LOC100067336 Equus caballus ENSECAG00000023592 I 0.972
LOC100072964 Equus caballus ENSECAG00000009996 I 0.930
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.972
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.972
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.930
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.792
P21573 Xenopus laevis P21573 I 0.972
P21574 Xenopus laevis P21574 I 0.930
P45441 Xenopus laevis P45441 I 0.915
PHUM156710 Pediculus humanus PHUM156710 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.792
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.750
Q00436 Xenopus laevis Q00436 I 0.972
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.781
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.972
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.836
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.972
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.972
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.764
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.792
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.750
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.806
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.847
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.847
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.806
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.958
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.972
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.915
YB-1 Homo sapiens ENSG00000065978 D 0.972
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.972
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.972
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.718
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.972
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.972
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.972
ybx1 Danio rerio ENSDARG00000004757 I 0.972
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.753
Ybx1 Mus musculus ENSMUSG00000028639 I 0.972
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.972
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.778
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.972
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.845
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.792
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.972
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.972
YBX1 Sorex araneus ENSSARG00000012628 I 0.764
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.972
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.915
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.972
YBX1 Microcebus murinus ENSMICG00000014984 I 0.972
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.972
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.972
Ybx2 Mus musculus ENSMUSG00000018554 I 0.930
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.915
YBX2 Procavia capensis ENSPCAG00000008019 I 0.930
YBX2 Canis familiaris ENSCAFG00000016128 I 0.930
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.930
YBX2 Oryzias latipes ENSORLG00000018683 I 0.708
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.915
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.930
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.736
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.861
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.930
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.915
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.930
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.703
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.726
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
YBX2 Echinops telfairi ENSETEG00000014271 I 0.726
YBX2 Homo sapiens ENSG00000006047 D 0.915
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.726
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.930
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.930
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.000
ybx2-a Xenopus laevis AAI69706 D 0.930
yps Drosophila melanogaster FBgn0022959 I 0.778