PK01617.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK01617.1 T23977_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK01617.1 PUF 690 724
PK01617.1 PUF 726 760
PK01617.1 PUF 762 796
PK01617.1 PUF 798 832
PK01617.1 PUF 834 869
PK01617.1 PUF 871 905
PK01617.1 PUF 907 941
PK01617.1 PUF 954 983

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.870
30143.m001162 Ricinus communis 30143.m001162 N 0.758
30143.m001164 Ricinus communis 30143.m001164 N 0.798
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.755
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.751
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.747
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.793
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.744
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.798
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.746
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.809
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.838
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.754
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.762
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.768
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.768
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.808
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.844
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.801
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.769
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.773
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.762
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.762
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.862
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.758
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.787
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.877
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.762
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.759
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.744
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.731
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.755
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.884
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.773
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.769
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.769
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.773
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.773
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.773
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.880
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.750
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.761
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.783
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.848
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.780
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.773
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.791
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.754
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.808
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.762
MDP0000119814 Malus x domestica MDP0000119814 N 0.833
MDP0000176743 Malus x domestica MDP0000176743 N 0.859
MDP0000191652 Malus x domestica MDP0000191652 N 0.708
MDP0000314338 Malus x domestica MDP0000314338 N 0.798
MDP0000319167 Malus x domestica MDP0000319167 N 0.765
MDP0000776183 Malus x domestica MDP0000776183 N 0.791
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.891
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.776
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.758
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.750
mgf011401m Mimulus guttatus mgf011401m N 0.801
mgf015234m Mimulus guttatus mgf015234m N 0.776
mgf015734m Mimulus guttatus mgf015734m N 0.780
PK00601.1 Cannabis sativa PK00601.1 N 0.801
PK21390.1 Cannabis sativa PK21390.1 N 0.773
ppa000626m Prunus persica ppa000626m N 0.812
ppa000627m Prunus persica ppa000627m N 0.762
ppa000731m Prunus persica ppa000731m N 0.899
SB03G039600 Sorghum bicolor Sb03g039600 N 0.801
SB04G037410 Sorghum bicolor Sb04g037410 N 0.786
SB09G001090 Sorghum bicolor Sb09g001090 N 0.754
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.744
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.844
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.744
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.755
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.790