CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK01617.1
(
Cannabis sativa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
PK01617.1
T23977_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK01617.1
PUF
690
724
DIIDHVVEFSTDQYGSRFIQQKLETATPEEKIMIF
PK01617.1
PUF
726
760
EITPHARTLMTDVFGNYVIQKFFEHGTASQRRELA
PK01617.1
PUF
762
796
QLTGHVLPLSLQMYGCRVIQKALEVVDVDQQTQMV
PK01617.1
PUF
798
832
ELDGAIMKCVRDQNGNHVIQKCIECVPQDRIQFII
PK01617.1
PUF
834
869
SFYGQVITLSTHPYGCRVIQRVLEHCDDLNTQQIIM
PK01617.1
PUF
871
905
EIMQSVCNLAQDQYGNYVIQHVLEHGKPLERTAII
PK01617.1
PUF
907
941
QLAGQIVRMSQQKFASNVVEKCLSFGSAEERQLLV
PK01617.1
PUF
954
983
LQAMMKDPFGNYVVQKVLETCSDESLELIL
Links
Other
PUF
family RBPs
Other
Cannabis sativa
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7MB88_BOVIN
Bos taurus
ENSBTAG00000002854
N
0.000
Ame_R015338
Ailuropoda melanoleuca
Ame_R015338
N
0.000
ENSCPOG00000024507
Cavia porcellus
ENSCPOG00000024507
N
0.000
LOC100057436
Equus caballus
ENSECAG00000018566
N
0.000
Tmem6
Rattus norvegicus
ENSRNOG00000003310
N
0.000
TMEM63A
Ornithorhynchus anatinus
ENSOANG00000001474
N
0.000
TMEM63A
Oryctolagus cuniculus
ENSOCUG00000001907
N
0.000
TMEM63A
Otolemur garnettii
ENSOGAG00000010346
N
0.000
TMEM63A
Ochotona princeps
ENSOPRG00000012151
N
0.000
TMEM63A
Pteropus vampyrus
ENSPVAG00000004786
N
0.000
TMEM63A
Sus scrofa
ENSSSCG00000010854
N
0.000
TMEM63A
Tursiops truncatus
ENSTTRG00000010132
N
0.000
Tmem63a
Mus musculus
ENSMUSG00000026519
N
0.000
TMEM63A
Monodelphis domestica
ENSMODG00000005934
N
0.000
TMEM63A
Callithrix jacchus
ENSCJAG00000012604
N
0.000
TMEM63A
Dasypus novemcinctus
ENSDNOG00000024203
N
0.000
Tmem63a
Dipodomys ordii
ENSDORG00000003334
N
0.000
TMEM63A
Echinops telfairi
ENSETEG00000012297
N
0.000
TMEM63A
Homo sapiens
ENSG00000196187
N
0.000
TMEM63A
Myotis lucifugus
ENSMLUG00000016338
N
0.000
TMEM63A
Gorilla gorilla
ENSGGOG00000000862
N
0.000
TMEM63A
Loxodonta africana
ENSLAFG00000017739
N
0.000
TMEM63A
Macropus eugenii
ENSMEUG00000003227
N
0.000
TMEM63A
Microcebus murinus
ENSMICG00000004058
N
0.000
XR_022984.1
Pan troglodytes
ENSPTRG00000002040
N
0.000