BGIOSIBCE005171 (Oryza indica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BGIOSIBCE005171 T24037_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE005171 PUF 573 607
BGIOSIBCE005171 PUF 609 643
BGIOSIBCE005171 PUF 645 679
BGIOSIBCE005171 PUF 682 715
BGIOSIBCE005171 PUF 717 751
BGIOSIBCE005171 PUF 754 788
BGIOSIBCE005171 PUF 790 823
BGIOSIBCE005171 PUF 833 866

Links

Other PUF family RBPs
Other Oryza indica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.746
30143.m001162 Ricinus communis 30143.m001162 N 0.814
30143.m001164 Ricinus communis 30143.m001164 N 0.857
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.764
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.750
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.757
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.729
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.782
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.842
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.786
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.860
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.721
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.961
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.932
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.932
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.743
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.719
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.846
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.800
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.792
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.792
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.792
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.750
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.789
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.861
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.757
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.736
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.737
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.728
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.739
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.754
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.751
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.800
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.800
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.800
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.811
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.804
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.803
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.747
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.964
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.946
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.743
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.733
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.847
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.804
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.760
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.853
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 1.000
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.757
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.961
MDP0000119814 Malus x domestica MDP0000119814 N 0.704
MDP0000176743 Malus x domestica MDP0000176743 N 0.736
MDP0000191652 Malus x domestica MDP0000191652 N 0.742
MDP0000314338 Malus x domestica MDP0000314338 N 0.842
MDP0000319167 Malus x domestica MDP0000319167 N 0.789
MDP0000776183 Malus x domestica MDP0000776183 N 0.836
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.754
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.789
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.796
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.789
mgf011401m Mimulus guttatus mgf011401m N 0.711
mgf015234m Mimulus guttatus mgf015234m N 0.821
mgf015734m Mimulus guttatus mgf015734m N 0.778
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.705
PK00601.1 Cannabis sativa PK00601.1 N 0.853
PK01617.1 Cannabis sativa PK01617.1 N 0.754
PK21390.1 Cannabis sativa PK21390.1 N 0.796
ppa000626m Prunus persica ppa000626m N 0.843
ppa000627m Prunus persica ppa000627m N 0.792
ppa000731m Prunus persica ppa000731m N 0.768
SB03G039600 Sorghum bicolor Sb03g039600 N 0.838
SB04G037410 Sorghum bicolor Sb04g037410 N 0.750
SB09G001090 Sorghum bicolor Sb09g001090 N 0.968
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.761
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.736
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.761
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.757
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.721