B9HMK2_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0008s05850 T24426_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s05850.1 PUF 662 696
POPTR_0008s05850.1 PUF 698 732
POPTR_0008s05850.1 PUF 734 768
POPTR_0008s05850.1 PUF 770 804
POPTR_0008s05850.1 PUF 806 840
POPTR_0008s05850.1 PUF 843 877
POPTR_0008s05850.1 PUF 879 913
POPTR_0008s05850.1 PUF 926 955

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.793
30143.m001162 Ricinus communis 30143.m001162 N 0.906
30143.m001164 Ricinus communis 30143.m001164 N 0.960
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.808
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.793
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.793
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.754
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.837
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.837
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.975
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.757
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.842
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.853
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.845
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.845
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.736
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.758
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.967
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.851
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.844
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.855
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.855
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.790
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.851
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.902
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.772
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.764
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.776
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.753
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.752
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.779
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.780
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.844
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.848
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.848
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.851
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.851
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.858
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.776
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.845
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.842
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.743
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.744
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.906
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.877
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.785
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.876
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.842
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.754
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.853
MDP0000119814 Malus x domestica MDP0000119814 N 0.736
MDP0000176743 Malus x domestica MDP0000176743 N 0.761
MDP0000191652 Malus x domestica MDP0000191652 N 0.793
MDP0000314338 Malus x domestica MDP0000314338 N 0.924
MDP0000319167 Malus x domestica MDP0000319167 N 0.851
MDP0000776183 Malus x domestica MDP0000776183 N 0.917
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.780
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.844
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.844
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.830
mgf011401m Mimulus guttatus mgf011401m N 0.728
mgf015234m Mimulus guttatus mgf015234m N 0.880
mgf015734m Mimulus guttatus mgf015734m N 0.840
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.740
PK00601.1 Cannabis sativa PK00601.1 N 0.931
PK01617.1 Cannabis sativa PK01617.1 N 0.798
PK21390.1 Cannabis sativa PK21390.1 N 0.865
ppa000626m Prunus persica ppa000626m N 0.942
ppa000627m Prunus persica ppa000627m N 0.855
ppa000731m Prunus persica ppa000731m N 0.797
SB03G039600 Sorghum bicolor Sb03g039600 N 0.865
SB04G037410 Sorghum bicolor Sb04g037410 N 0.750
SB09G001090 Sorghum bicolor Sb09g001090 N 0.849
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.797
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.772
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.797
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.797
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.746