cassava33553.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava33553.m1 T24702_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava33553.m1 PUF 458 492
cassava33553.m1 PUF 494 527
cassava33553.m1 PUF 530 564
cassava33553.m1 PUF 566 600
cassava33553.m1 PUF 602 636
cassava33553.m1 PUF 640 673
cassava33553.m1 PUF 675 709
cassava33553.m1 PUF 722 751

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.909
30143.m001162 Ricinus communis 30143.m001162 N 0.755
30143.m001164 Ricinus communis 30143.m001164 N 0.791
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.754
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.754
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.760
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.822
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.762
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.790
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.754
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.801
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.862
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.750
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.757
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.753
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.753
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.804
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.880
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.786
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.769
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.779
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.768
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.767
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.780
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.876
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.772
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.773
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.757
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.748
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.772
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.862
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.775
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.772
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.768
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.772
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.772
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.767
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.851
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.746
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.756
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.796
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.869
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.805
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.786
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.790
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.797
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.750
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.807
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.757
MDP0000176743 Malus x domestica MDP0000176743 N 0.854
MDP0000191652 Malus x domestica MDP0000191652 N 0.716
MDP0000314338 Malus x domestica MDP0000314338 N 0.793
MDP0000319167 Malus x domestica MDP0000319167 N 0.768
MDP0000776183 Malus x domestica MDP0000776183 N 0.783
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.862
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.782
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.771
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.727
mgf011401m Mimulus guttatus mgf011401m N 0.811
mgf015234m Mimulus guttatus mgf015234m N 0.761
mgf015734m Mimulus guttatus mgf015734m N 0.764
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.791
PK01617.1 Cannabis sativa PK01617.1 N 0.862
PK21390.1 Cannabis sativa PK21390.1 N 0.778
ppa000626m Prunus persica ppa000626m N 0.791
ppa000627m Prunus persica ppa000627m N 0.771
ppa000731m Prunus persica ppa000731m N 0.920
SB03G039600 Sorghum bicolor Sb03g039600 N 0.804
SB04G037410 Sorghum bicolor Sb04g037410 N 0.804
SB09G001090 Sorghum bicolor Sb09g001090 N 0.749
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.749
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.883
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.749
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.754
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.815