CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma11g14500.1
(
Glycine max
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Glyma11g14500.1
T24886_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma11g14500.1
PUF
688
722
EIVGHVVEFSADQYGSRFIQQKLETATTEEKKMVY
Glyma11g14500.1
PUF
724
757
EIMPHALALMTDVFGNYVVQKFFEHGLASQRREL
Glyma11g14500.1
PUF
760
794
KLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMV
Glyma11g14500.1
PUF
796
830
ELDGNVMRCVRDQNGNHVIQKCIECVPEDAIDFIV
Glyma11g14500.1
PUF
832
867
TFFDQVVTLSTHPYGCRVIQRVLEHCEDPTTQQKVM
Glyma11g14500.1
PUF
869
903
EILGAVSMLAQDQYGNYVVQHVLEHGKSHERSSII
Glyma11g14500.1
PUF
905
939
ELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLV
Glyma11g14500.1
PUF
952
981
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Glycine max
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29595.m000292
Ricinus communis
29595.m000292
N
0.768
30143.m001162
Ricinus communis
30143.m001162
N
0.819
30143.m001164
Ricinus communis
30143.m001164
N
0.859
APUM1
Arabidopsis thaliana
AT2G29200-TAIR-G
N
0.866
APUM2
Arabidopsis thaliana
AT2G29190-TAIR-G
N
0.855
APUM3
Arabidopsis thaliana
AT2G29140-TAIR-G
N
0.869
APUM4
Arabidopsis thaliana
AT3G10360-TAIR-G
N
0.718
B9GJ97_POPTR
Populus trichocarpa
POPTR_0001s25020
N
0.884
B9HMK2_POPTR
Populus trichocarpa
POPTR_0008s05850
N
0.844
B9HPE1_POPTR
Populus trichocarpa
POPTR_0009s03980
N
0.899
B9HTG3_POPTR
Populus trichocarpa
POPTR_0010s20870
N
0.859
B9HUI2_POPTR
Populus trichocarpa
POPTR_0010s23250
N
0.740
BGIOSIBCE005171
Oryza indica
BGIOSIBCE005171
N
0.800
BGIOSIBCE017275
Oryza indica
BGIOSIBCE017275
N
0.811
BRADI2G39240
Brachypodium distachyon
BRADI2G39240
N
0.803
BRADI2G39410
Brachypodium distachyon
BRADI2G39410
N
0.803
BRADI3G55540
Brachypodium distachyon
BRADI3G55540
N
0.718
cassava10774.m1
Manihot esculenta
cassava10774.m1
N
0.740
cassava13144.valid.m1
Manihot esculenta
cassava13144.valid.m1
N
0.848
cassava19436.valid.m1
Manihot esculenta
cassava19436.valid.m1
N
0.928
cassava19437.valid.m1
Manihot esculenta
cassava19437.valid.m1
N
0.920
cassava30948.valid.m1
Manihot esculenta
cassava30948.valid.m1
N
0.902
cassava30949.valid.m1
Manihot esculenta
cassava30949.valid.m1
N
0.902
cassava33553.m1
Manihot esculenta
cassava33553.m1
N
0.775
Cucsa.138830
Cucumis sativus
Cucsa.138830
N
0.905
Cucsa.165170
Cucumis sativus
Cucsa.165170
N
0.822
Cucsa.308530
Cucumis sativus
Cucsa.308530
N
0.751
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.762
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.770
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.746
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.735
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.780
Glyma10g35290.1
Glycine max
Glyma10g35290.1
N
0.755
Glyma11g14530.1
Glycine max
Glyma11g14530.1
N
0.971
Glyma11g14550.1
Glycine max
Glyma11g14550.1
N
0.971
Glyma12g06430.1
Glycine max
Glyma12g06430.1
N
0.975
Glyma12g06450.1
Glycine max
Glyma12g06450.1
N
0.978
Glyma15g04060.1
Glycine max
Glyma15g04060.1
N
0.942
Glyma20g32230.1
Glycine max
Glyma20g32230.1
N
0.744
GRMZM2G012964
Zea mays
GRMZM2G012964
N
0.799
GRMZM2G042623
Zea mays
GRMZM2G042623
N
0.796
GRMZM2G123537
Zea mays
GRMZM2G123537
N
0.722
GSVIVG00016236001
Vitis vinifera
GSVIVG00016236001
N
0.746
GSVIVG00016507001
Vitis vinifera
GSVIVG00016507001
N
0.877
GSVIVG00024918001
Vitis vinifera
GSVIVG00024918001
N
0.916
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.783
LOC_Os01g62650
Oryza sativa
LOC_Os01g62650
N
0.841
LOC_Os01g74030
Oryza sativa
LOC_Os01g74030
N
0.800
LOC_Os02g57390
Oryza sativa
LOC_Os02g57390
N
0.729
LOC_Os05g01910
Oryza sativa
LOC_Os05g01910
N
0.811
MDP0000119814
Malus x domestica
MDP0000119814
N
0.711
MDP0000176743
Malus x domestica
MDP0000176743
N
0.744
MDP0000191652
Malus x domestica
MDP0000191652
N
0.865
MDP0000314338
Malus x domestica
MDP0000314338
N
0.841
MDP0000319167
Malus x domestica
MDP0000319167
N
0.909
MDP0000776183
Malus x domestica
MDP0000776183
N
0.841
Medtr1g120450
Medicago truncatula
Medtr1g120450
N
0.740
Medtr2g117180
Medicago truncatula
Medtr2g117180
N
0.942
Medtr4g084270
Medicago truncatula
Medtr4g084270
N
0.942
Medtr5g087730
Medicago truncatula
Medtr5g087730
N
0.793
mgf011401m
Mimulus guttatus
mgf011401m
N
0.747
mgf015234m
Mimulus guttatus
mgf015234m
N
0.808
mgf015734m
Mimulus guttatus
mgf015734m
N
0.884
PDK_20s1515321g002
Phoenix dactylifera
PDK_20s1515321g002
N
0.720
PK00601.1
Cannabis sativa
PK00601.1
N
0.855
PK01617.1
Cannabis sativa
PK01617.1
N
0.773
PK21390.1
Cannabis sativa
PK21390.1
N
0.927
ppa000626m
Prunus persica
ppa000626m
N
0.855
ppa000627m
Prunus persica
ppa000627m
N
0.924
ppa000731m
Prunus persica
ppa000731m
N
0.780
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.851
SB04G037410
Sorghum bicolor
Sb04g037410
N
0.726
SB09G001090
Sorghum bicolor
Sb09g001090
N
0.803
scaffold_4100004.1
Arabidopsis lyrata
scaffold_4100004.1
N
0.865
XM_002311043.1
Populus trichocarpa
POPTR_0008s03630
N
0.761
XM_002879157.1
Arabidopsis lyrata
fgenesh2_kg.4__893__AT2G29140.1
N
0.865
XM_002880988.1
Arabidopsis lyrata
fgenesh2_kg.4__898__AT2G29200.1
N
0.866
XM_002884744.1
Arabidopsis lyrata
scaffold_301182.1
N
0.711