CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000319167
(
Malus x domestica
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
MDP0000319167
T25206_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000319167
PUF
788
822
EIVGHVVEFSADQYGSRFIQQKLETATIEEKHMVY
MDP0000319167
PUF
825
858
IMPQALALMTDVFGNYVIQKFFEHGFPSQRRELA
MDP0000319167
PUF
860
894
KLFSHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMV
MDP0000319167
PUF
896
930
ELDGHVMRCVRDQNGNHVIQKCIECVPEEAIHFII
MDP0000319167
PUF
932
964
TFFDQVVTLSTHPYGCRVIQRVLEHCEDENTQS
MDP0000319167
PUF
969
1003
EILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAII
MDP0000319167
PUF
1005
1039
ELAGKIVQMSQQKFASNVVEKCLTFGGPAERELLV
MDP0000319167
PUF
1052
1081
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Malus x domestica
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44002
Xenopus laevis
AAH44002
I
0.000
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.000
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
0.000
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.000
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.000
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.000
ESRP1
Oryctolagus cuniculus
ENSOCUG00000001316
I
0.000
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
0.000
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.000
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.000
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.000
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.000
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.000
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.000
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.000
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.000
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.000
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.000
ESRP1
Equus caballus
ENSECAG00000000784
I
0.000
ESRP1
Erinaceus europaeus
ENSEEUG00000001673
I
0.000
ESRP1
Felis catus
ENSFCAG00000009920
I
0.000
ESRP1
Homo sapiens
ENSG00000104413
I
0.000
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.000
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.000
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
0.000
ESRP1
Loxodonta africana
ENSLAFG00000001498
I
0.000
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.000
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.000
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.000
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.000
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.000
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.000