ppa000627m (Prunus persica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ppa000627m T25240_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa000627m PUF 727 761
ppa000627m PUF 764 796
ppa000627m PUF 799 833
ppa000627m PUF 835 869
ppa000627m PUF 871 903
ppa000627m PUF 908 942
ppa000627m PUF 944 978
ppa000627m PUF 991 1020

Links

Other PUF family RBPs
Other Prunus persica RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.756
30143.m001162 Ricinus communis 30143.m001162 N 0.822
30143.m001164 Ricinus communis 30143.m001164 N 0.859
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.873
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.855
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.865
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.717
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.894
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.855
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.908
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.869
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.746
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.792
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.799
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.791
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.791
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.720
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.732
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.865
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.931
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.934
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.923
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.923
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.771
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.923
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.815
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.739
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.770
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.785
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.758
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.736
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.788
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.750
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.924
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.927
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.927
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.927
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.931
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.956
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.788
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.727
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.738
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.863
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.920
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.791
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.847
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.792
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.739
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.799
MDP0000119814 Malus x domestica MDP0000119814 N 0.000
MDP0000176743 Malus x domestica MDP0000176743 N 0.739
MDP0000314338 Malus x domestica MDP0000314338 N 0.844
MDP0000319167 Malus x domestica MDP0000319167 N 0.952
MDP0000776183 Malus x domestica MDP0000776183 N 0.841
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.729
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.926
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.912
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.772
mgf011401m Mimulus guttatus mgf011401m N 0.736
mgf015234m Mimulus guttatus mgf015234m N 0.818
mgf015734m Mimulus guttatus mgf015734m N 0.897
PK00601.1 Cannabis sativa PK00601.1 N 0.855
PK01617.1 Cannabis sativa PK01617.1 N 0.762
PK21390.1 Cannabis sativa PK21390.1 N 0.949
ppa000626m Prunus persica ppa000626m N 0.855
ppa000731m Prunus persica ppa000731m N 0.772
SB03G039600 Sorghum bicolor Sb03g039600 N 0.840
SB04G037410 Sorghum bicolor Sb04g037410 N 0.731
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.876
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.760
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.876
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.866
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.710