SPA_estExt_Genewise1Plus.C_890021 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SPA_estExt_Genewise1Plus.C_890021 T53975_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.877
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.841
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.841
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.841
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.841
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.841
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.841
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.841
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SPA_estExt_Genewise1Plus.C_890021 RRM 9 80
SPA_estExt_Genewise1Plus.C_890021 RRM 155 219

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.788
186191 Helobdella robusta 186191 I 0.737
AAEL002980 Aedes aegypti AAEL002980 I 0.884
AAEL014167 Aedes aegypti AAEL014167 I 0.884
AAH44979 Xenopus laevis AAH44979 I 0.855
AAH72799 Xenopus laevis AAH72799 I 0.799
AAH84107 Xenopus laevis AAH84107 I 0.783
AGAP011637 Anopheles gambiae AGAP011637 I 0.862
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.856
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.841
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.799
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.777
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.877
Bm1_37765 Brugia malayi Bm1_37765 I 0.745
CAA41021 Xenopus laevis CAA41021 I 0.855
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.870
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.870
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.833
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.804
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.761
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.788
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.841
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.841
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.799
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.703
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.891
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.891
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.854
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.832
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.832
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.862
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.877
GE16390 Drosophila yakuba FBgn0233919 I 0.877
GF21334 Drosophila ananassae FBgn0098336 I 0.877
GG18748 Drosophila erecta FBgn0110957 I 0.877
GH24608 Drosophila grimshawi FBgn0132064 I 0.884
GJ16850 Drosophila virilis FBgn0204029 I 0.884
GK25839 Drosophila willistoni FBgn0227798 I 0.884
GL14287 Drosophila persimilis FBgn0151892 I 0.877
GM12396 Drosophila sechellia FBgn0167333 I 0.877
LOAG_02293 Loa loa LOAG_02293 I 0.745
LOC100050830 Equus caballus ENSECAG00000018407 I 0.799
LOC100068274 Equus caballus ENSECAG00000013141 I 0.841
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.732
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.796
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.799
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.833
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.799
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.871
P45429 Xenopus laevis P45429 I 0.855
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.799
snf Drosophila mojavensis FBgn0069598 I 0.884
snf Drosophila melanogaster FBgn0003449 D 0.877
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.826
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.826
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.739
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.841
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.841
SNRPA Sus scrofa ENSSSCG00000002998 I 0.841
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.841
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.826
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.732
snrpa Danio rerio ENSDARG00000018890 I 0.833
SNRPA Canis familiaris ENSCAFG00000005091 I 0.841
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.826
SNRPA Echinops telfairi ENSETEG00000019205 I 0.790
SNRPA Felis catus ENSFCAG00000016209 I 0.841
SNRPA Homo sapiens ENSG00000077312 D 0.841
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.825
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.841
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.841
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.841
SNRPA Oryzias latipes ENSORLG00000006536 I 0.854
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.833
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.841
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.841
SNRPA Procavia capensis ENSPCAG00000012325 I 0.841
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.841
Snrpa Mus musculus ENSMUSG00000061479 I 0.841
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.841
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.841
SNRPA Microcebus murinus ENSMICG00000009766 I 0.703
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.790
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.841
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.799
SNRPB2 Homo sapiens ENSG00000125870 I 0.799
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.791
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.806
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.752
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.799
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.799
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.799
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.799
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.806
snrpb2 Danio rerio ENSDARG00000039424 I 0.781
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.777
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.754
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.799
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.791
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.799
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.806
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.799
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.799
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.799
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.799
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.799
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.799
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.763
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.799
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.806
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.788
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.799
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.796
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.712
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.799
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.799
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.799
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.799
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.774
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.791
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.745
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.734
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.734