BRADI1G17510 (Brachypodium distachyon)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		BRADI1G17510 T00399_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G17510.1 CCCH ZF 247 268
BRADI1G17510.1 RRM 390 449

Links

Other CCCH ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.711
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.759
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.759
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.711
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.854
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.880
PK18074.1 Cannabis sativa PK18074.1 N 0.765
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.854
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.767
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.878
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.736
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.878
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.878
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.878
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.736
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.756
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.855
MDP0000164538 Malus x domestica MDP0000164538 N 0.765
MDP0000259773 Malus x domestica MDP0000259773 N 0.807
MDP0000256775 Malus x domestica MDP0000256775 N 0.807
MDP0000243086 Malus x domestica MDP0000243086 N 0.878
MDP0000220601 Malus x domestica MDP0000220601 N 0.831
MDP0000120462 Malus x domestica MDP0000120462 N 0.843
MDP0000120231 Malus x domestica MDP0000120231 N 0.843
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.866
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.805
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.866
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.866
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.723
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.833
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.833
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.753
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.866
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.807
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.747
mgf014647m Mimulus guttatus mgf014647m N 0.855
mgf000973m Mimulus guttatus mgf000973m N 0.750
mgf002273m Mimulus guttatus mgf002273m N 0.753
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.928
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.963
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.939
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.939
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.963
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.928
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.723
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.890
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.831
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.878
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.810
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.733
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.709
ppa023263m Prunus persica ppa023263m N 0.890
ppa002413m Prunus persica ppa002413m N 0.831
ppa002383m Prunus persica ppa002383m N 0.788
30169.m006472 Ricinus communis 30169.m006472 N 0.729
30169.m006471 Ricinus communis 30169.m006471 N 0.855
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.702
SB05G001540 Sorghum bicolor Sb05g001540 N 0.807
SB02G043180 Sorghum bicolor Sb02g043180 N 0.963
SB01G036490 Sorghum bicolor Sb01g036490 N 0.927
SB08G001980 Sorghum bicolor Sb08g001980 N 0.807
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.831
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.878
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.927
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.892
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.963
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.735
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.927
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.807
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.819