B9HTG3_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0010s20870 T24430_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s20870.1 PUF 636 670
POPTR_0010s20870.1 PUF 672 706
POPTR_0010s20870.1 PUF 708 742
POPTR_0010s20870.1 PUF 744 778
POPTR_0010s20870.1 PUF 780 814
POPTR_0010s20870.1 PUF 817 851
POPTR_0010s20870.1 PUF 853 887
POPTR_0010s20870.1 PUF 900 929

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.808
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.808
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.808
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.761
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.819
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.801
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.804
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.863
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.754
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.863
PK00601.1 Cannabis sativa PK00601.1 N 0.946
PK01617.1 Cannabis sativa PK01617.1 N 0.809
PK21390.1 Cannabis sativa PK21390.1 N 0.876
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.913
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.858
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.786
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.866
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.862
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.859
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.866
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.862
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.873
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.783
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.787
MDP0000176743 Malus x domestica MDP0000176743 N 0.772
MDP0000191652 Malus x domestica MDP0000191652 N 0.807
MDP0000314338 Malus x domestica MDP0000314338 N 0.935
MDP0000319167 Malus x domestica MDP0000319167 N 0.862
MDP0000776183 Malus x domestica MDP0000776183 N 0.924
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.801
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.862
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.866
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.971
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.858
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.769
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.862
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.841
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.791
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.858
mgf011401m Mimulus guttatus mgf011401m N 0.732
mgf015234m Mimulus guttatus mgf015234m N 0.895
mgf015734m Mimulus guttatus mgf015734m N 0.855
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.860
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.871
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.860
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.764
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.887
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.871
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.751
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.787
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.790
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.775
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.851
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.768
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.975
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.783
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.848
ppa000626m Prunus persica ppa000626m N 0.946
ppa000731m Prunus persica ppa000731m N 0.808
ppa000627m Prunus persica ppa000627m N 0.869
29595.m000292 Ricinus communis 29595.m000292 N 0.801
30143.m001164 Ricinus communis 30143.m001164 N 0.971
30143.m001162 Ricinus communis 30143.m001162 N 0.917
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.793
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.760
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.759
SB09G001090 Sorghum bicolor Sb09g001090 N 0.863
SB03G039600 Sorghum bicolor Sb03g039600 N 0.876
SB04G037410 Sorghum bicolor Sb04g037410 N 0.764
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.891
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.917
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.755
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.761
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.860
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.856