29595.m000292 (Ricinus communis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 29595.m000292 T24676_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29595.m000292 PUF 686 720
29595.m000292 PUF 722 755
29595.m000292 PUF 758 792
29595.m000292 PUF 794 828
29595.m000292 PUF 830 864
29595.m000292 PUF 867 901
29595.m000292 PUF 903 937
29595.m000292 PUF 950 979

Links

Other PUF family RBPs
Other Ricinus communis RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.732
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.807
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.732
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.736
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.815
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.736
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.736
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.736
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.760
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.796
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.760
PK00601.1 Cannabis sativa PK00601.1 N 0.787
PK01617.1 Cannabis sativa PK01617.1 N 0.870
PK21390.1 Cannabis sativa PK21390.1 N 0.771
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.869
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.756
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.776
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.764
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.764
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.761
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.767
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.768
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.851
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.764
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.870
MDP0000176743 Malus x domestica MDP0000176743 N 0.851
MDP0000776183 Malus x domestica MDP0000776183 N 0.773
MDP0000319167 Malus x domestica MDP0000319167 N 0.761
MDP0000314338 Malus x domestica MDP0000314338 N 0.783
MDP0000119814 Malus x domestica MDP0000119814 N 0.836
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.758
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.764
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.754
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.909
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.801
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.866
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.754
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.855
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.778
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.728
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.775
mgf015234m Mimulus guttatus mgf015234m N 0.768
mgf011401m Mimulus guttatus mgf011401m N 0.807
mgf015734m Mimulus guttatus mgf015734m N 0.753
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.746
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.764
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.764
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.796
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.746
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.786
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.755
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.750
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.754
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.739
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.855
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.793
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.872
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.801
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.747
ppa000626m Prunus persica ppa000626m N 0.794
ppa000731m Prunus persica ppa000731m N 0.902
ppa000627m Prunus persica ppa000627m N 0.756
30143.m001164 Ricinus communis 30143.m001164 N 0.794
30143.m001162 Ricinus communis 30143.m001162 N 0.758
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.772
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.734
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.739
SB09G001090 Sorghum bicolor Sb09g001090 N 0.746
SB03G039600 Sorghum bicolor Sb03g039600 N 0.793
SB04G037410 Sorghum bicolor Sb04g037410 N 0.785
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.855
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.794
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.783
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.742
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.753
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.778