e_gw1.2.1396.1 (Selaginella moellendorfii)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 e_gw1.2.1396.1 T24730_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.2.1396.1 PUF 1 24
e_gw1.2.1396.1 PUF 26 59
e_gw1.2.1396.1 PUF 62 96
e_gw1.2.1396.1 PUF 98 132
e_gw1.2.1396.1 PUF 134 166
e_gw1.2.1396.1 PUF 171 205
e_gw1.2.1396.1 PUF 207 241
e_gw1.2.1396.1 PUF 254 283

Links

Other PUF family RBPs
Other Selaginella moellendorfii RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.710
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.707
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.710
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.710
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.707
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.717
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.714
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.714
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.734
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.705
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.734
PK00601.1 Cannabis sativa PK00601.1 N 0.743
PK01617.1 Cannabis sativa PK01617.1 N 0.744
PK21390.1 Cannabis sativa PK21390.1 N 0.756
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.732
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.728
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.745
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.720
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.751
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.746
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.746
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.743
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.746
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.743
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.721
MDP0000776183 Malus x domestica MDP0000776183 N 0.739
MDP0000319167 Malus x domestica MDP0000319167 N 0.762
MDP0000176743 Malus x domestica MDP0000176743 N 0.727
MDP0000314338 Malus x domestica MDP0000314338 N 0.749
MDP0000191652 Malus x domestica MDP0000191652 N 0.703
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.749
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.753
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.725
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.754
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.757
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.758
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.754
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.751
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.742
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.000
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.718
mgf015734m Mimulus guttatus mgf015734m N 0.755
mgf011401m Mimulus guttatus mgf011401m N 0.000
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.728
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.735
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.728
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.767
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.714
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.735
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.821
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.824
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.821
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.760
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.737
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.753
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.725
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.725
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.751
ppa000731m Prunus persica ppa000731m N 0.757
ppa000626m Prunus persica ppa000626m N 0.754
ppa000627m Prunus persica ppa000627m N 0.758
29595.m000292 Ricinus communis 29595.m000292 N 0.739
30143.m001164 Ricinus communis 30143.m001164 N 0.754
30143.m001162 Ricinus communis 30143.m001162 N 0.717
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.960
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.844
SB09G001090 Sorghum bicolor Sb09g001090 N 0.727
SB03G039600 Sorghum bicolor Sb03g039600 N 0.749
SB04G037410 Sorghum bicolor Sb04g037410 N 0.713
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.721
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.762
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.764
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.723
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.727
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.705