Glyma15g04060.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma15g04060.1 T24894_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma15g04060.1 PUF 631 665
Glyma15g04060.1 PUF 668 700
Glyma15g04060.1 PUF 703 737
Glyma15g04060.1 PUF 739 773
Glyma15g04060.1 PUF 775 807
Glyma15g04060.1 PUF 812 846
Glyma15g04060.1 PUF 848 882
Glyma15g04060.1 PUF 895 924

Links

Other PUF family RBPs
Other Glycine max RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.859
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.869
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.707
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.869
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.866
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.858
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.848
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.714
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.809
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.724
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.809
PK00601.1 Cannabis sativa PK00601.1 N 0.859
PK21390.1 Cannabis sativa PK21390.1 N 0.949
PK01617.1 Cannabis sativa PK01617.1 N 0.773
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.750
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.830
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.919
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.757
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.942
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.945
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.945
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.945
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.949
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.753
MDP0000319167 Malus x domestica MDP0000319167 N 0.934
MDP0000314338 Malus x domestica MDP0000314338 N 0.844
MDP0000191652 Malus x domestica MDP0000191652 N 0.897
MDP0000176743 Malus x domestica MDP0000176743 N 0.750
MDP0000119814 Malus x domestica MDP0000119814 N 0.703
MDP0000776183 Malus x domestica MDP0000776183 N 0.841
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.924
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.930
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.919
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.919
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.767
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.865
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.728
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.952
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.733
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.793
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.931
mgf015234m Mimulus guttatus mgf015234m N 0.818
mgf015734m Mimulus guttatus mgf015734m N 0.901
mgf011401m Mimulus guttatus mgf011401m N 0.736
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.810
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.803
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.855
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.803
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.736
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.810
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.726
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.771
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.766
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.781
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.912
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.746
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.873
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.858
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.891
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.760
ppa000731m Prunus persica ppa000731m N 0.772
ppa000627m Prunus persica ppa000627m N 0.956
ppa000626m Prunus persica ppa000626m N 0.859
29595.m000292 Ricinus communis 29595.m000292 N 0.767
30143.m001162 Ricinus communis 30143.m001162 N 0.822
30143.m001164 Ricinus communis 30143.m001164 N 0.862
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.739
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.751
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.784
SB09G001090 Sorghum bicolor Sb09g001090 N 0.806
SB03G039600 Sorghum bicolor Sb03g039600 N 0.855
SB04G037410 Sorghum bicolor Sb04g037410 N 0.735
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.920
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.874
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.738
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.802
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.799
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.731