ppa000626m (Prunus persica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ppa000626m T25239_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa000626m PUF 725 759
ppa000626m PUF 761 795
ppa000626m PUF 797 831
ppa000626m PUF 833 867
ppa000626m PUF 869 904
ppa000626m PUF 906 940
ppa000626m PUF 942 976
ppa000626m PUF 989 1018

Links

Other PUF family RBPs
Other Prunus persica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.812
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.744
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.812
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.812
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.751
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.822
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.808
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.808
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.842
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.744
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.842
PK00601.1 Cannabis sativa PK00601.1 N 0.920
PK01617.1 Cannabis sativa PK01617.1 N 0.812
PK21390.1 Cannabis sativa PK21390.1 N 0.862
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.917
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.769
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.851
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.776
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.859
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.862
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.862
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.859
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.855
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.859
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.780
MDP0000776183 Malus x domestica MDP0000776183 N 0.964
MDP0000319167 Malus x domestica MDP0000319167 N 0.851
MDP0000176743 Malus x domestica MDP0000176743 N 0.762
MDP0000314338 Malus x domestica MDP0000314338 N 0.964
MDP0000191652 Malus x domestica MDP0000191652 N 0.793
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.862
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.942
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.765
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.791
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.851
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.844
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.844
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.844
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.776
mgf015734m Mimulus guttatus mgf015734m N 0.841
mgf011401m Mimulus guttatus mgf011401m N 0.722
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.843
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.857
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.843
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.859
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.758
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.857
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.723
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.784
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.773
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.787
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.946
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.837
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.942
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.773
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.762
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.837
ppa000731m Prunus persica ppa000731m N 0.801
ppa000627m Prunus persica ppa000627m N 0.855
29595.m000292 Ricinus communis 29595.m000292 N 0.794
30143.m001164 Ricinus communis 30143.m001164 N 0.942
30143.m001162 Ricinus communis 30143.m001162 N 0.895
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.786
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.760
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.754
SB09G001090 Sorghum bicolor Sb09g001090 N 0.846
SB03G039600 Sorghum bicolor Sb03g039600 N 0.855
SB04G037410 Sorghum bicolor Sb04g037410 N 0.751
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.751
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.913
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.873
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.842
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.839
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.744