RBM42 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000126254 T37245_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6		 Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M142_0.6 RRM 51 121

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000262633 RRM 383 453
ENSP00000353663 RRM 354 424

Links

Other RRM family RBPs
Other Homo sapiens RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005612 Ailuropoda melanoleuca Ame_R005612 N 0.000
CNBP Anolis carolinensis ENSACAG00000013192 N 0.000
CNBP_BOVIN Bos taurus ENSBTAG00000012159 N 0.000
A6ML16_CALJA Callithrix jacchus ENSCJAG00000017430 N 0.000
CNBP Canis familiaris ENSCAFG00000004320 N 0.000
CNBP Cavia porcellus ENSCPOG00000012816 N 0.000
Cnbp Dipodomys ordii ENSDORG00000002919 N 0.000
ENSETEG00000008408 Echinops telfairi ENSETEG00000008408 N 0.000
LOC100050146 Equus caballus ENSECAG00000009512 N 0.000
CNBP Felis catus ENSFCAG00000008665 N 0.000
CNBP_CHICK Gallus gallus ENSGALG00000005001 N 0.000
CNBP Gorilla gorilla ENSGGOG00000010085 N 0.000
CNBP Homo sapiens ENSG00000169714 N 0.000
CNBP Loxodonta africana ENSLAFG00000002502 N 0.000
CNBP Macaca mulatta ENSMMUG00000011585 N 0.000
CNBP Macropus eugenii ENSMEUG00000011699 N 0.000
CNBP Monodelphis domestica ENSMODG00000008362 N 0.000
Zcchc13 Mus musculus ENSMUSG00000031330 N 0.000
Cnbp Mus musculus ENSMUSG00000030057 N 0.000
CNBP Myotis lucifugus ENSMLUG00000012554 N 0.000
CNBP Ochotona princeps ENSOPRG00000005487 N 0.000
CNBP Ornithorhynchus anatinus ENSOANG00000000585 N 0.000
CNBP Oryctolagus cuniculus ENSOCUG00000008696 N 0.000
ZCCHC13 Oryctolagus cuniculus ENSOCUG00000008008 N 0.000
CNBP Otolemur garnettii ENSOGAG00000005144 N 0.000
CNBP Pan troglodytes ENSPTRG00000015369 N 0.000
ENSPPYG00000013423 Pongo pygmaeus ENSPPYG00000013423 N 0.000
CNBP Procavia capensis ENSPCAG00000011572 N 0.000
CNBP Pteropus vampyrus ENSPVAG00000015070 N 0.000
Cnbp Rattus norvegicus ENSRNOG00000010239 N 0.000
CNBP Sorex araneus ENSSARG00000011874 N 0.000
CNBP Spermophilus tridecemlineatus ENSSTOG00000000173 N 0.000
ZCCHC13 Sus scrofa ENSSSCG00000012417 N 0.000
CNBP Taeniopygia guttata ENSTGUG00000004001 N 0.000
CNBP Tarsius syrichta ENSTSYG00000004344 N 0.000
CNBP Tursiops truncatus ENSTTRG00000015266 N 0.000
CNBP Vicugna pacos ENSVPAG00000007138 N 0.000
AAA81168 Xenopus laevis AAA81168 N 0.000
AAI69746 Xenopus laevis AAI69746 N 0.000
CAA69031 Xenopus laevis CAA69031 N 0.000
cnbp Xenopus tropicalis ENSXETG00000025147 N 0.000