RBM42 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000126254 T37245_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6		 Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M142_0.6 RRM 51 121

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000262633 RRM 383 453
ENSP00000353663 RRM 354 424

Links

Other RRM family RBPs
Other Homo sapiens RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.000
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.000
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.000
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.000
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.000
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.000
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.000
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.000
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.000
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.000
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.000
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.000
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.000
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.000
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.000
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.000
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.000
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.000
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.000
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.000
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.000
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.000
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.000
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.000
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.000
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.000
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.000
pcbp2 Danio rerio ENSDARG00000013184 D 0.000
pcbp3 Danio rerio ENSDARG00000054378 I 0.000
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.000
Pcbp2 Dipodomys ordii ENSDORG00000001384 I 0.000
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.000
PCBP2 Equus caballus ENSECAG00000022389 I 0.000
LOC100050101 Equus caballus ENSECAG00000012413 I 0.000
LOC100050579 Equus caballus ENSECAG00000002544 I 0.000
LOC100060660 Equus caballus ENSECAG00000024218 I 0.000
PCBP3 Felis catus ENSFCAG00000014812 I 0.000
PCBP3 Gallus gallus ENSGALG00000013155 I 0.000
PCBP3 Gallus gallus ENSGALG00000004394 I 0.000
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.000
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.000
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.000
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.000
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.000
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.000
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.000
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.000
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.000
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.000
PCBP3 Homo sapiens ENSG00000183570 I 0.000
PCBP1 Homo sapiens ENSG00000169564 D 0.000
PCBP2 Homo sapiens ENSG00000197111 D 0.000
PCBP4 Homo sapiens ENSG00000090097 I 0.000
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.000
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.000
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.000
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.000
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.000
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.000
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.000
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.000
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.000
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.000
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.000
PCBP1 Microcebus murinus ENSMICG00000002140 I 0.000
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.000
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.000
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.000
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.000
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.000
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.000
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.000
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.000
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.000
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.000
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.000
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.000
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.000
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.000
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.000
ENSOCUG00000025394 Oryctolagus cuniculus ENSOCUG00000025394 I 0.000
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.000
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.000
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.000
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.000
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.000
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.000
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.000
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.000
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.000
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.000
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.000
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.000
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.000
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.000
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.000
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.000
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.000
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.000
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.000
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.000
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.000
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.000
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.000
ENSRNOG00000012044 Rattus norvegicus ENSRNOG00000012044 I 0.000
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.000
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.000
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.000
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.000
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.000
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.000
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.000
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.000
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.000
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.000
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.000
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.000
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.000
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.000
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.000
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.000
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.000
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.000
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.000
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.000
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.000
AAH41241 Xenopus laevis AAH41241 I 0.000
AAH84195 Xenopus laevis AAH84195 I 0.000
CAB50743 Xenopus laevis CAB50743 I 0.000
CAD29864 Xenopus laevis CAD29864 I 0.000
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.000