CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM42
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000126254
T37245_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M142_0.6
RRM
51
121
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000262633
RRM
383
453
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
ENSP00000353663
RRM
354
424
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005612
Ailuropoda melanoleuca
Ame_R005612
N
0.000
CNBP
Anolis carolinensis
ENSACAG00000013192
N
0.000
CNBP_BOVIN
Bos taurus
ENSBTAG00000012159
N
0.000
A6ML16_CALJA
Callithrix jacchus
ENSCJAG00000017430
N
0.000
CNBP
Canis familiaris
ENSCAFG00000004320
N
0.000
CNBP
Cavia porcellus
ENSCPOG00000012816
N
0.000
Cnbp
Dipodomys ordii
ENSDORG00000002919
N
0.000
ENSETEG00000008408
Echinops telfairi
ENSETEG00000008408
N
0.000
LOC100050146
Equus caballus
ENSECAG00000009512
N
0.000
CNBP
Felis catus
ENSFCAG00000008665
N
0.000
CNBP_CHICK
Gallus gallus
ENSGALG00000005001
N
0.000
CNBP
Gorilla gorilla
ENSGGOG00000010085
N
0.000
CNBP
Homo sapiens
ENSG00000169714
N
0.000
CNBP
Loxodonta africana
ENSLAFG00000002502
N
0.000
CNBP
Macaca mulatta
ENSMMUG00000011585
N
0.000
CNBP
Macropus eugenii
ENSMEUG00000011699
N
0.000
CNBP
Monodelphis domestica
ENSMODG00000008362
N
0.000
Zcchc13
Mus musculus
ENSMUSG00000031330
N
0.000
Cnbp
Mus musculus
ENSMUSG00000030057
N
0.000
CNBP
Myotis lucifugus
ENSMLUG00000012554
N
0.000
CNBP
Ochotona princeps
ENSOPRG00000005487
N
0.000
CNBP
Ornithorhynchus anatinus
ENSOANG00000000585
N
0.000
CNBP
Oryctolagus cuniculus
ENSOCUG00000008696
N
0.000
ZCCHC13
Oryctolagus cuniculus
ENSOCUG00000008008
N
0.000
CNBP
Otolemur garnettii
ENSOGAG00000005144
N
0.000
CNBP
Pan troglodytes
ENSPTRG00000015369
N
0.000
ENSPPYG00000013423
Pongo pygmaeus
ENSPPYG00000013423
N
0.000
CNBP
Procavia capensis
ENSPCAG00000011572
N
0.000
CNBP
Pteropus vampyrus
ENSPVAG00000015070
N
0.000
Cnbp
Rattus norvegicus
ENSRNOG00000010239
N
0.000
CNBP
Sorex araneus
ENSSARG00000011874
N
0.000
CNBP
Spermophilus tridecemlineatus
ENSSTOG00000000173
N
0.000
ZCCHC13
Sus scrofa
ENSSSCG00000012417
N
0.000
CNBP
Taeniopygia guttata
ENSTGUG00000004001
N
0.000
CNBP
Tarsius syrichta
ENSTSYG00000004344
N
0.000
CNBP
Tursiops truncatus
ENSTTRG00000015266
N
0.000
CNBP
Vicugna pacos
ENSVPAG00000007138
N
0.000
AAA81168
Xenopus laevis
AAA81168
N
0.000
AAI69746
Xenopus laevis
AAI69746
N
0.000
CAA69031
Xenopus laevis
CAA69031
N
0.000
cnbp
Xenopus tropicalis
ENSXETG00000025147
N
0.000