GK25839 (Drosophila willistoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0227798 T44262_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.993
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.841
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.841
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.841
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.841
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.841
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.841
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.841
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0254982 RRM 9 80
FBpp0254982 RRM 144 209

Links

Other RRM family RBPs
Other Drosophila willistoni RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.855
AAEL002980 Aedes aegypti AAEL002980 I 0.949
AAEL014167 Aedes aegypti AAEL014167 I 0.949
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.841
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.813
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.763
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.826
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.806
AGAP011637 Anopheles gambiae AGAP011637 I 0.928
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.892
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.920
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.841
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.813
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.884
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.884
Bm1_37765 Brugia malayi Bm1_37765 I 0.739
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.790
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.746
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.833
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.754
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.813
SNRPA Canis familiaris ENSCAFG00000005091 I 0.841
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.813
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.862
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.841
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.813
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.833
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.804
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.942
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.942
snrpb2 Danio rerio ENSDARG00000039424 I 0.790
snrpa Danio rerio ENSDARG00000018890 I 0.862
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.884
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.841
GF21334 Drosophila ananassae FBgn0098336 I 0.993
GG18748 Drosophila erecta FBgn0110957 I 0.993
GH24608 Drosophila grimshawi FBgn0132064 I 1.000
snf Drosophila melanogaster FBgn0003449 D 0.993
snf Drosophila mojavensis FBgn0069598 I 1.000
GL14287 Drosophila persimilis FBgn0151892 I 0.993
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.993
GM12396 Drosophila sechellia FBgn0167333 I 0.993
GD24751 Drosophila simulans FBgn0196072 I 0.710
GJ16850 Drosophila virilis FBgn0204029 I 1.000
GE16390 Drosophila yakuba FBgn0233919 I 0.993
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.768
SNRPA Echinops telfairi ENSETEG00000019205 I 0.790
LOC100068274 Equus caballus ENSECAG00000013141 I 0.841
LOC100050830 Equus caballus ENSECAG00000018407 I 0.813
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.826
SNRPA Felis catus ENSFCAG00000016209 I 0.841
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.820
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.761
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.826
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.813
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.841
186191 Helobdella robusta 186191 I 0.761
105398 Helobdella robusta 105398 I 0.768
SNRPB2 Homo sapiens ENSG00000125870 I 0.813
SNRPA Homo sapiens ENSG00000077312 D 0.841
LOAG_02293 Loa loa LOAG_02293 I 0.739
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.899
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.725
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.813
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.841
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.813
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.719
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.739
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.820
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.813
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.848
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.791
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.813
Gm5145 Mus musculus ENSMUSG00000071273 I 0.703
Snrpa Mus musculus ENSMUSG00000061479 I 0.833
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.806
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.841
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.906
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.841
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.813
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.841
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.813
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.806
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.790
SNRPA Oryzias latipes ENSORLG00000006536 I 0.855
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.768
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.813
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.841
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.813
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.841
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.841
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.813
SNRPA Procavia capensis ENSPCAG00000012325 I 0.841
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.806
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.841
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.777
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.841
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.813
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.813
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.813
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.727
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.727
SNRPA Sus scrofa ENSSSCG00000002998 I 0.841
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.813
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.820
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.710
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.841
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.775
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.813
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.783
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.848
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.790
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.813
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.841
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.826
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.813
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.813
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.739
AAH44979 Xenopus laevis AAH44979 I 0.833
AAH72799 Xenopus laevis AAH72799 I 0.784
AAH84107 Xenopus laevis AAH84107 I 0.775
CAA41021 Xenopus laevis CAA41021 I 0.833
P45429 Xenopus laevis P45429 I 0.833
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.791