B9MVK8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s03390 T45646_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s03390.1 RRM 95 164
POPTR_0014s03390.1 RRM 188 259
POPTR_0014s03390.1 RRM 298 362

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010643 Ailuropoda melanoleuca Ame_R010643 N 0.000
Ame_R012731 Ailuropoda melanoleuca Ame_R012731 N 0.000
LARP4B Anolis carolinensis ENSACAG00000002858 N 0.000
LARP4B Bos taurus ENSBTAG00000013899 N 0.000
A7MB26_BOVIN Bos taurus ENSBTAG00000017164 N 0.000
LARP4 Callithrix jacchus ENSCJAG00000021131 N 0.000
LARP4B Canis familiaris ENSCAFG00000005546 N 0.000
LARP4 Canis familiaris ENSCAFG00000008174 N 0.000
LARP4B Cavia porcellus ENSCPOG00000009375 N 0.000
ENSCPOG00000020519 Cavia porcellus ENSCPOG00000020519 N 0.000
LARP4B Choloepus hoffmanni ENSCHOG00000007831 N 0.000
larp4a Danio rerio ENSDARG00000078401 N 0.000
LARP4B Danio rerio ENSDARG00000062146 N 0.000
LARP4B Dasypus novemcinctus ENSDNOG00000002462 N 0.000
LARP4B Echinops telfairi ENSETEG00000011249 N 0.000
LOC100057616 Equus caballus ENSECAG00000024040 N 0.000
LARP4 Equus caballus ENSECAG00000012479 N 0.000
LARP4B Erinaceus europaeus ENSEEUG00000008391 N 0.000
LARP4B Felis catus ENSFCAG00000000721 N 0.000
Q5F449_CHICK Gallus gallus ENSGALG00000006163 N 0.000
LARP5 Gallus gallus ENSGALG00000006672 N 0.000
LARP4B Gasterosteus aculeatus ENSGACG00000017535 N 0.000
LARP4B Gorilla gorilla ENSGGOG00000003572 N 0.000
LARP4 Gorilla gorilla ENSGGOG00000015230 N 0.000
LARP4B Homo sapiens ENSG00000107929 N 0.000
LARP4 Homo sapiens ENSG00000161813 N 0.000
LARP4B Loxodonta africana ENSLAFG00000015334 N 0.000
LARP4 Loxodonta africana ENSLAFG00000005160 N 0.000
LARP4B Macaca mulatta ENSMMUG00000005279 N 0.000
LOC693337 Macaca mulatta ENSMMUG00000008172 N 0.000
LARP4 Meleagris gallopavo ENSMGAG00000010598 N 0.000
LARP4B Meleagris gallopavo ENSMGAG00000005472 N 0.000
LARP4B Monodelphis domestica ENSMODG00000005957 N 0.000
Larp4b Mus musculus ENSMUSG00000033499 N 0.000
Larp4 Mus musculus ENSMUSG00000023025 N 0.000
LARP4B Myotis lucifugus ENSMLUG00000005880 N 0.000
LARP4B Ochotona princeps ENSOPRG00000003300 N 0.000
LARP4 Ornithorhynchus anatinus ENSOANG00000004373 N 0.000
LARP4B Ornithorhynchus anatinus ENSOANG00000006100 N 0.000
LARP4B Oryctolagus cuniculus ENSOCUG00000004950 N 0.000
LARP4B Oryzias latipes ENSORLG00000006080 N 0.000
LARP4B Pan troglodytes ENSPTRG00000002235 N 0.000
XR_019868.1 Pan troglodytes ENSPTRG00000004935 N 0.000
ENSPPYG00000004512 Pongo pygmaeus ENSPPYG00000004512 N 0.000
ENSPPYG00000002035 Pongo pygmaeus ENSPPYG00000002035 N 0.000
LARP4 Procavia capensis ENSPCAG00000003671 N 0.000
LARP4 Pteropus vampyrus ENSPVAG00000016840 N 0.000
LARP4B Pteropus vampyrus ENSPVAG00000009784 N 0.000
Larp5 Rattus norvegicus ENSRNOG00000015888 N 0.000
LARP4B Sorex araneus ENSSARG00000001243 N 0.000
LARP4 Sorex araneus ENSSARG00000012469 N 0.000
LARP4B Spermophilus tridecemlineatus ENSSTOG00000000587 N 0.000
LARP4B Sus scrofa ENSSSCG00000011162 N 0.000
LARP5 Taeniopygia guttata ENSTGUG00000000811 N 0.000
ENSTGUG00000013982 Taeniopygia guttata ENSTGUG00000013982 N 0.000
LARP4B Tarsius syrichta ENSTSYG00000002568 N 0.000
LARP4 Tarsius syrichta ENSTSYG00000004342 N 0.000
LARP4B Tetraodon nigroviridis ENSTNIG00000004571 N 0.000
LARP4B Tetraodon nigroviridis ENSTNIG00000007991 N 0.000
LARP4 Tupaia belangeri ENSTBEG00000005167 N 0.000
LARP4B Tursiops truncatus ENSTTRG00000011151 N 0.000
LARP4 Tursiops truncatus ENSTTRG00000003764 N 0.000
LARP4B Vicugna pacos ENSVPAG00000000128 N 0.000
AAI24888 Xenopus laevis AAI24888 N 0.000
larp4 Xenopus tropicalis ENSXETG00000007283 N 0.000
larp4b Xenopus tropicalis ENSXETG00000016882 N 0.000