LOC100056021 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000020699 T36685_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.878
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.878
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.878
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.824
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.763
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000018467 RRM 1 39
ENSECAP00000018467 RRM 57 125
ENSECAP00000018467 RRM 149 218
ENSECAP00000018467 RRM 252 320

Links

Other RRM family RBPs
Other Equus caballus RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.921
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.879
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.878
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.878
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.878
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.878
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.878
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.878
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.878
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.878
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.878
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.878
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.878
PABPC1 Homo sapiens ENSG00000070756 D 0.878
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.875
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.875
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.875
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.875
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.875
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.875
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.868
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.857
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.853
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.853
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.842
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.835
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.835
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.828
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.828
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.824
PABPC3 Homo sapiens ENSG00000151846 D 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.824
AAH72110 Xenopus laevis AAH72110 I 0.824
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.824
CAA40721 Xenopus laevis CAA40721 I 0.824
P20965 Xenopus laevis P20965 I 0.824
AAI08463 Xenopus laevis AAI08463 I 0.824
pabpc1a Danio rerio ENSDARG00000017219 I 0.824
AAH52100 Xenopus laevis AAH52100 I 0.824
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.824
AAA60936 Xenopus laevis AAA60936 I 0.821
pabpc1b Danio rerio ENSDARG00000021140 I 0.818
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.817
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.817
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.817
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.814
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.811
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.810
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.808
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.803
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.796
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.796
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.782
AAH73435 Xenopus laevis AAH73435 I 0.781
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.774
PABPC4 Gallus gallus ENSGALG00000003800 I 0.774
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.771
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.771
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.771
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.768
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.767
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.767
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.767
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.767
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.767
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.767
LOC100054235 Equus caballus ENSECAG00000009396 I 0.767
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.767
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.763
pabpc4 Danio rerio ENSDARG00000059259 I 0.763
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.763
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.763
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.763
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.763
PABPC4 Homo sapiens ENSG00000090621 D 0.763
Gm10110 Mus musculus ENSMUSG00000062093 I 0.760
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.760
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.756
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.756
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.756
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.753
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.753
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.753
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.746
PABPC1L Gallus gallus ENSGALG00000004123 I 0.742
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.742
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.739
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.738
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.738
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.738
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.731
Q6GR16 Xenopus laevis Q6GR16 I 0.731
AAH71118 Xenopus laevis AAH71118 I 0.731
Q98SP8 Xenopus laevis Q98SP8 I 0.728
AAH80020 Xenopus laevis AAH80020 I 0.728
AAK29408 Xenopus laevis AAK29408 I 0.728
pabpc1l Danio rerio ENSDARG00000002597 I 0.724
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.717
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.713
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.713
ENSCHOG00000008178 Choloepus hoffmanni ENSCHOG00000008178 N 0.713
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.703
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.703