PABPC1L (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000005114 T41898_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.809
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.809
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.809
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.784
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000005282 RRM 13 83
ENSTGUP00000005282 RRM 101 169
ENSTGUP00000005282 RRM 193 250
ENSTGUP00000005282 RRM 308 376

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.918
PABPC1L Gallus gallus ENSGALG00000004123 I 0.910
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.889
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.885
AAH71118 Xenopus laevis AAH71118 I 0.875
AAH80020 Xenopus laevis AAH80020 I 0.875
Q6GR16 Xenopus laevis Q6GR16 I 0.875
Q98SP8 Xenopus laevis Q98SP8 I 0.875
AAK29408 Xenopus laevis AAK29408 I 0.875
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.860
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.835
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.835
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.835
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.835
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.835
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.835
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.832
PABPC1 Homo sapiens ENSG00000070756 D 0.832
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.832
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.832
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.832
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.832
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.832
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.832
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.832
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.832
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.832
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.832
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.832
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.829
AAH52100 Xenopus laevis AAH52100 I 0.828
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.828
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.828
CAA40721 Xenopus laevis CAA40721 I 0.828
AAA60936 Xenopus laevis AAA60936 I 0.828
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.828
PABPC1L Bos taurus ENSBTAG00000016849 I 0.828
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.828
P20965 Xenopus laevis P20965 I 0.828
pabpc1a Danio rerio ENSDARG00000017219 I 0.824
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.824
PABPC4 Gallus gallus ENSGALG00000003800 I 0.821
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.821
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.820
LOC100070836 Equus caballus ENSECAG00000022681 I 0.817
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.817
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.817
Q6IP09 Xenopus laevis Q6IP09 I 0.817
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.817
AAH72110 Xenopus laevis AAH72110 I 0.817
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.817
AAI08463 Xenopus laevis AAI08463 I 0.817
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.817
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.814
AAH73435 Xenopus laevis AAH73435 I 0.814
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.814
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.814
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.814
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.814
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.814
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.811
pabpc1b Danio rerio ENSDARG00000021140 I 0.811
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.810
PABPC1L Homo sapiens ENSG00000101104 I 0.810
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.810
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.810
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.810
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.810
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.810
pabpc1l Danio rerio ENSDARG00000002597 I 0.810
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.806
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.806
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.806
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.806
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.806
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.806
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.806
PABPC4 Homo sapiens ENSG00000090621 D 0.806
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.806
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.803
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.803
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.803
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.803
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.803
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.803
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.803
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.803
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.803
pabpc4 Danio rerio ENSDARG00000059259 I 0.803
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.803
LOC100054235 Equus caballus ENSECAG00000009396 I 0.803
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.803
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.803
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.803
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.803
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.803
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.803
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.799
Gm10110 Mus musculus ENSMUSG00000062093 I 0.799
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.799
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.796
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.796
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.796
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.793
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.792
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.792
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.792
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.789
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.789
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.785
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.785
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.785
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.781
PABPC3 Homo sapiens ENSG00000151846 D 0.778
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.771
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.771
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.767
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.763
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.753
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.748
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.742
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.738
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.738
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.718
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.717
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.716
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.716
LOC100056021 Equus caballus ENSECAG00000020699 I 0.713
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.713
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.713
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.713
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.709
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.709
ISCW014211 Ixodes scapularis ISCW014211 I 0.707
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.707
PHUM617090 Pediculus humanus PHUM617090 I 0.707
AAEL010318 Aedes aegypti AAEL010318 I 0.706
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.702
AGAP011092 Anopheles gambiae AGAP011092 I 0.702
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.702
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.702